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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="Prokaryotic whole genome annotation pipeline"
HOMEPAGE="https://vicbioinformatics.com/software.prokka.shtml"
SRC_URI="https://github.com/tseemann/prokka/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND="
sys-process/parallel
sci-biology/bioperl
sci-biology/prodigal
|| ( sci-biology/ncbi-tools++ sci-biology/ncbi-blast+ )
sci-biology/hmmer:*
sci-biology/infernal
sci-biology/exonerate
sci-biology/barrnap"
DEPEND="${RDEPEND}"
# sci-biology/minced
# >=sci-biolohy/hmmer-3.1
# Aragorn
# >=RNAmmer-1.2
# >=HMMmmer-2.0 (that is not sci-biology/hmmer)
# SignalP >= 3.0
# sequin
# tbl2asn >= 23.0 from wget --mirror -nH -nd ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/converters/by_program/tbl2asn/linux64.tbl2asn.gz
src_install() {
default
dobin bin/prokka
}
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