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# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
PYTHON_COMPAT=( python2_7 )
inherit python-r1
DESCRIPTION="Compare quality of multiple genome assemblies to each other"
HOMEPAGE="http://bioinf.spbau.ru/QUAST"
SRC_URI="http://sourceforge.net/projects/quast/files/${P}.tar.gz"
LICENSE="GPL-2" # and some other for the bundled copies, see http://quast.bioinf.spbau.ru/LICENSE
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="
dev-python/matplotlib[${PYTHON_USEDEP}]
sci-biology/mummer
sci-biology/glimmerhmm"
# sci-biology/GAGE
# sci-biology/GeneMarkS
# sci-biology/GeneMarkES
# sci-biology/MetaGeneMark
# sci-biology/ncbi-tools++
#
# comes with bundled executables in ./quast_libs
# the above packages need to be created first
RDEPEND="${DEPEND}"
src_install(){
python_foreach_impl python_newscript quast.py quast
python_foreach_impl python_newscript metaquast.py metaquast
python_foreach_impl python_newscript icarus.py icarus
dodoc manual.html
# TODO: install quast_libs/ subdirectory contents into some PATH and PYTHON_PATH
# TODO: unbundle bundled executables
}
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