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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="Correct substitution errors in Illumina reads"
HOMEPAGE="http://www.genome.umd.edu/quorum.html
https://github.com/gmarcais/Quorum"
SRC_URI="https://github.com/gmarcais/Quorum/releases/download/v${PV}/${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND=">=sci-biology/jellyfish-2.1.4:2"
RDEPEND="${DEPEND}"
src_prepare() {
default
# fix jellyfish include path
find -type f -name "*.cc" -exec sed -i -e 's/<jellyfish\//<jellyfish2\//g' {} + || die
find -type f -name "*.hpp" -exec sed -i -e 's/<jellyfish\//<jellyfish2\//g' {} + || die
}
src_configure(){
econf --enable-relative-paths --with-relative-jf-path
default
}
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