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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
DESCRIPTION="Illumina read corrector"
HOMEPAGE="http://aluru-sun.ece.iastate.edu/doku.php?id=reptile"
SRC_URI="http://aluru-sun.ece.iastate.edu/lib/exe/fetch.php?media=source:reptile-v${PV}.zip -> "${PN}"-v"${PV}".zip"
LICENSE="LGPL-3 GPL-3 Boost-1.0"
SLOT="0"
KEYWORDS="~amd64"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
dev-lang/perl"
S="${WORKDIR}"/"${PN}"-v"${PV}"
src_prepare(){
sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i src/makefile || die
sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i utils/reptile_merger/makefile || die
sed -e 's#-Wall -O3#$(CXXFLAGS)#' -i utils/seq-analy/makefile || die
}
src_compile(){
cd src || die
emake all
cd ../utils/reptile_merger || die
emake all
cd ../seq-analy || die
emake all
}
src_install(){
newbin src/reptile-v1.1 reptile
dobin utils/reptile_merger/reptile_merger
dobin utils/fastq-converter-v2.0.pl
}
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