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# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=3
DESCRIPTION="Convert from ace to gap4 (of staden v1.x), not needed to convert ace for gap5 of staden v2"
HOMEPAGE="http://genome.imb-jena.de/software/roche454ace2caf"
SRC_URI="http://genome.imb-jena.de/software/roche454ace2caf/download/src/roche454ace2gap-2010-12-08.tgz"
LICENSE="FLI-Jena"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}
sci-biology/align_to_scf
sci-biology/sff_dump
sci-biology/caftools
sci-biology/staden
dev-lang/perl
app-shells/ksh"
S="${WORKDIR}"/roche2gap
src_install(){
dobin bin/*.pl bin/roche454ace2gap
dosym bin/roche454ace2gap roche2gap # claims to require ksh, have not tested bash
}
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