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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
[ "$PV" == "9999" ] && inherit git-r3
DESCRIPTION="Stringent short-read aligner supporting filters and various output formats"
HOMEPAGE="https://github.com/magnusmanske/snpomatic"
# http://snpomatic.sourceforge.net/snpomatic_manual.pdf
if [ "$PV" == "9999" ]; then
EGIT_REPO_URI="https://github.com/magnusmanske/snpomatic.git"
KEYWORDS=""
else
SRC_URI=""
KEYWORDS=""
fi
LICENSE="GPL-3"
SLOT="0"
IUSE=""
DEPEND=""
RDEPEND="${DEPEND}"
src_prepare(){
sed -e 's/^CXX=/#CXX=/;s/^CXXFLAGS=/#CXXFLAGS=/' -i Makefile || die
}
src_install(){
dobin findknownsnps
dodoc doc/Manual.doc
}
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