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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
AUTOTOOLS_AUTORECONF=yes
inherit flag-o-matic eutils perl-module webapp
DESCRIPTION="Analyze Restriction enzyme data, draw gen. maps, population genomics (RAD-seq Illumina sequencing)"
HOMEPAGE="http://creskolab.uoregon.edu/stacks"
SRC_URI="http://creskolab.uoregon.edu/stacks/source/${P}.tar.gz"
LICENSE="GPL-3"
# SLOT="0" # webapp ebuilds do not set SLOT
KEYWORDS=""
IUSE=""
# sys-cluster/openmpi
DEPEND="
dev-cpp/sparsehash
sci-biology/samtools
sci-biology/bamtools"
RDEPEND="${DEPEND}
dev-lang/perl
>=dev-lang/php-5
dev-perl/DBD-mysql"
src_configure() {
econf --enable-bam --enable-sparsehash
webapp_src_preinst
sed -i 's#/usr/lib/libbam.a#-lbam#' Makefile || die
}
src_compile(){
emake DESTDIR="${D}"
}
src_install() {
emake install DESTDIR="${D}"
mydoc="Changes README TODO INSTALL"
perl-module_src_install DESTDIR="${D}"
webapp_src_install || die "Failed running webapp_src_install"
}
pkg_postinst() {
webapp_pkg_postinst || die "webapp_pkg_postinst failed"
}
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