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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
DESCRIPTION="Synteny Mapping and Analysis Program"
HOMEPAGE="http://www.agcol.arizona.edu/software/symap/ https://github.com/csoderlund/SyMAP"
SRC_URI="https://github.com/csoderlund/SyMAP/archive/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
# error: package netscape.javascript does not exist
KEYWORDS=""
DEPEND="
sci-biology/blat
sci-biology/mummer
sci-biology/muscle"
RDEPEND="${DEPEND}
>=virtual/jre-1.7:*"
S="${WORKDIR}/SyMAP-${PV}/java"
src_unpack() {
default
cd "${S}"
tar xvf classes_ext.tar.gz
cd ../
tar xvf ext.tar.gz
}
src_prepare() {
default
sed -e 's/#JAVA_PATH=\/usr/JAVA_PATH=\/usr/g' -i Makefile || die
}
src_compile() {
emake class_dirs
emake
}
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