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# Copyright 1999-2018 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
DESCRIPTION="Correct misassemblies using linked reads from 10x Genomics Chromium"
HOMEPAGE="https://github.com/bcgsc/tigmint"
SRC_URI="https://github.com/bcgsc/tigmint/archive/1.1.0.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS=""
IUSE=""
DEPEND="
dev-python/intervaltree
sci-biology/pybedtools
sci-biology/pysam
dev-python/statistics"
RDEPEND="${DEPEND}
sci-biology/bwa
sci-biology/bedtools
sci-biology/samtools:0
sci-biology/seqtools
dev-util/makefile2graph
media-gfx/graphviz
dev-vcs/git
dev-libs/libxslt
net-misc/curl"
# for full features also sci-biology/abyss should be installed but it addition here
# would create circular dependency
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