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--- trinityrnaseq-2.1.1/trinity-plugins/Makefile.ori 2015-11-21 00:34:52.310075544 +0100
+++ trinityrnaseq-2.1.1/trinity-plugins/Makefile 2015-11-21 00:37:16.260075920 +0100
@@ -10,7 +10,7 @@
PARAFLY_CODE=parafly-code
TRIMMOMATIC_CODE=Trimmomatic-0.32
-trinity_essentials: jellyfish scaffold_iworm_contigs_target fastool_target parafly_target trimmomatic_target samtools
+trinity_essentials: scaffold_iworm_contigs_target fastool_target parafly_target
trimmomatic_target:
ln -sf ${TRIMMOMATIC_CODE} Trimmomatic
@@ -31,7 +31,7 @@
# cd htslib-1.2.1 && ./configure && $(MAKE)
tar xvf ${HTSLIB_CODE} && cd htslib && $(MAKE)
-scaffold_iworm_contigs_target: htslib_target
+scaffold_iworm_contigs_target:
cd scaffold_iworm_contigs && $(MAKE)
fastool_target:
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