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# Copyright 1999-2014 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI=5
inherit toolchain-funcs
DESCRIPTION="TwinScan, N-SCAN, and Pairagon: A gene structure prediction pipeline"
HOMEPAGE="http://mblab.wustl.edu/software/twinscan"
SRC_URI="http://mblab.wustl.edu/software/download/iscan-${PV}.tar_.gz -> ${P}.tar.gz"
LICENSE="all-rights-reserved"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND="dev-libs/glib:2"
RDEPEND="${DEPEND}"
S="${WORKDIR}/N-SCAN"
src_prepare() {
sed -i "1 a use lib '/usr/share/${PN}/lib/perl5';" "${S}"/bin/*.pl || die
sed -i '/my $blast_param/ s/#//' "${S}/bin/runTwinscan2.pl" || die
tc-export CC AR RANLIB
sed \
-e 's:ar :$(AR) :g' \
-e 's:ranlib :$(RANLIB) :g' \
-e 's: -o : $(LDFLAGS) -o :g' \
-i Makefile || die
sed \
-e "/^GLIB_CFLAGS/s:=.*:=$($(tc-getPKG_CONFIG) --cflags glib-2.0) -DHAS_GLIB:g" \
-e "/^GLIB_LFLAGS/s:=.*:=$($(tc-getPKG_CONFIG) --libs glib-2.0)-DHAS_GLIB:g" \
-i Makefile.include || die
}
src_install() {
dobin "${S}/bin/iscan" "${S}"/bin/*.pl || die
insinto /usr/share/${PN}
doins -r "${S}/parameters" || die
doins -r "${S}/lib" || die
echo "TWINSCAN=/usr" > "${S}"/99${PN}
doenvd "${S}"/99${PN} || die
rm -rf examples/tmp
dodoc examples/* README*
}
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