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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
AUTOTOOLS_AUTORECONF=true
inherit autotools-utils flag-o-matic multilib
DESCRIPTION="EST sequence clustering: d2 function, edit distance, common word heuristics"
HOMEPAGE="http://code.google.com/p/wcdest/"
SRC_URI="http://wcdest.googlecode.com/files/wcd-express-${PV}.tar.gz -> ${P}.tar.gz
http://www.bioinf.wits.ac.za/~scott/wcd.html
http://www.bioinf.wits.ac.za/~scott/wcd.pdf"
S="${WORKDIR}"/wcd-express-"${PV}"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE="doc mpi threads"
# This code (0.4.1 at least) has been tested using LAMMPI (RedHat, Suse,
# MacOS X), MPICH (Ubuntu) and MVAPICH (Suse)
DEPEND="mpi? ( sys-cluster/mpich2 )"
RDEPEND=""
PATCHES=(
"${FILESDIR}"/${P}-ldflags.patch
"${FILESDIR}"/${P}-impl-decl.patch
)
src_prepare() {
rm -r src/*o src/.deps || die
autotools-utils_src_prepare
}
src_configure(){
local myeconfargs=()
use mpi && myeconfargs+=( --enable-mpi )
use threads && myeconfargs+=( --enable-pthreads )
autotools-utils_src_configure
}
src_compile() {
autotools-utils_src_compile
use doc && autotools-utils_src_compile pdf info html
}
src_install() {
use doc && HTML_DOCS=( doc/wcd.html doc/wcd.pdf doc/wcd.texi )
autotools-utils_src_install PREFIX=/usr LIBDIR="${D}"usr/$(get_libdir)
dodoc "${DISTDIR}"/wcd.*
}
# consider providing the EMBOSS wrapper for wcd
# https://code.google.com/p/wcdest/downloads/detail?name=wcd_emboss_wrap_001.tar.gz
# also consider ESTsim
# https://code.google.com/p/wcdest/downloads/detail?name=estsim_distrib.tar.gz&can=2&q=
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