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# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
NEED_PYTHON=2.5
PYTHON_MODNAME="ccpn"
PYTHON_USE_WITH="ssl tk"
EAPI="2"
inherit python toolchain-funcs portability distutils eutils
MY_PN="${PN}mr"
DESCRIPTION="The Collaborative Computing Project for NMR"
SRC_URI="http://www.bio.cam.ac.uk/ccpn/download/${MY_PN}/analysis${PV}.tar.gz"
HOMEPAGE="http://www.ccpn.ac.uk/ccpn"
SLOT="0"
LICENSE="|| ( CCPN LGPL-2.1 )"
KEYWORDS="~amd64 ~x86"
IUSE="doc opengl"
RDEPEND="
virtual/glut
dev-python/elementtree
dev-tcltk/tix
dev-python/numpy"
DEPEND="${RDEPEND}"
RESTRICT="mirror"
S="${WORKDIR}"/${MY_PN}
pkg_setup() {
python_version
}
src_prepare() {
distutils_src_prepare
echo "" > "${S}"/ccpnmr2.1/c/environment.txt || die "failed to kill environment.txt"
}
src_compile() {
local tk_ver
local myconf
tk_ver="$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)"
if use opengl; then
if has_version media-libs/freeglut; then
GLUT_NEED_INIT="-DNEED_GLUT_INIT"
else
GLUT_NEED_INIT=""
fi
IGNORE_GL_FLAG=""
GL_FLAG="-DUSE_GL_FALSE"
GLUT_NOT_IN_GL=""
GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
GL_DIR="/usr"
GL_LIB="-lglut -lGLU -lGL"
GL_INCLUDE_FLAGS="-I\$(GL_DIR)/include"
GL_LIB_FLAGS="-L\$(GL_DIR)/$(get_libdir)"
else
IGNORE_GL_FLAG="-DIGNORE_GL"
GL_FLAG="-DUSE_GL_FALSE"
GLUT_NOT_IN_GL=""
GLUT_FLAG="\$(GLUT_NEED_INIT) \$(GLUT_NOT_IN_GL)"
fi
cd ccpnmr2.1/c
emake \
CC="$(tc-getCC)" \
LINK_FLAGS="${LDFLAGS} -fPIC" \
MALLOC_FLAG= \
FPIC_FLAG="-fPIC" \
SHARED_FLAGS="\${LINK_FLAGS} -shared" \
MATH_LIB="-lm" \
X11_DIR="/usr" \
X11_LIB="-lX11 -lXext" \
X11_INCLUDE_FLAGS="-I\$(X11_DIR)/include" \
X11_LIB_FLAGS="-L\$(X11_DIR)/lib" \
TCL_DIR="/usr" \
TCL_LIB="-ltcl${tk_ver}" \
TCL_INCLUDE_FLAGS="-I\$(TCL_DIR)/include" \
TCL_LIB_FLAGS="-L\$(TCL_DIR)/$(get_libdir)" \
TK_DIR="/usr" \
TK_LIB="-ltk${tk_ver}" \
TK_INCLUDE_FLAGS="-I\$(TK_DIR)/include" \
TK_LIB_FLAGS="-L\$(TK_DIR)/$(get_libdir)" \
PYTHON_DIR="/usr" \
PYTHON_INCLUDE_FLAGS="-I\$(PYTHON_DIR)/include/python${PYVER}" \
CC_FLAGS="${CFLAGS} \$(MALLOC_FLAG) \$(FPIC_FLAG)" \
GLUT_NEED_INIT="${GLUT_NEED_INIT}" \
IGNORE_GL_FLAG="${IGNORE_GL_FLAG}" \
GL_FLAG="${GL_FLAG}" \
GLUT_NOT_IN_GL="${GLUT_NOT_IN_GL}" \
GLUT_FLAG="${GLUT_FLAG}" \
GL_DIR="${GL_DIR}" \
GL_LIB="${GL_LIB}" \
GL_INCLUDE_FLAGS="${GL_INCLUDE_FLAGS}" \
GL_LIB_FLAGS="${GL_LIB_FLAGS}" \
LINK="$(tc-getCC)" \
MAKE="make" \
CO_NAME="-c \$<" \
OUT_NAME="-o \$@" \
OBJ_SUFFIX="o" \
DYLIB_SUFFIX="so" \
RM="rm -f" \
LINK_LIBRARIES="sh linkSharedObjs" \
all links || \
die "failed to compile"
}
src_install() {
local in_path
local gentoo_sitedir
local libdir
local files
local tkver
in_path=$(python_get_sitedir)/${PN}
gentoo_sitedir=$(python_get_sitedir)
libdir=$(get_libdir)
tkver=$(best_version dev-lang/tk | cut -d- -f3 | cut -d. -f1,2)
for wrapper in analysis dangle dataShifter formatConverter pipe2azara; do
sed -e "s:gentoo_sitedir:${gentoo_sitedir}:g" \
-e "s:libdir:${libdir}:g" \
-e "s:tkver:${tkver}:g" \
"${FILESDIR}"/${wrapper} > "${T}"/${wrapper} || die "Fail fix ${wrapper}"
dobin "${T}"/${wrapper} || die "Failed to install ${wrapper}"
done
use doc && treecopy $(find . -name doc) "${D}"usr/share/doc/${PF}/html/
ebegin "Removing unneeded docs"
find . -name doc -exec rm -rf '{}' \; 2> /dev/null
eend
if [[ ${PYVER} > 2.4 ]]; then
for i in ccpnmr2.1/python/memops/format/compatibility/{Converters,part2/Converters2}.py; do
sed \
-e 's:#from __future__:from __future__:g' \
-i ${i}
done
fi
insinto ${in_path}
ebegin "Installing main files"
doins -r ccpnmr2.1/{data,model,python} || die "main files installation failed"
eend
einfo "Adjusting permissions"
files="ccpnmr/c/ContourFile.so
ccpnmr/c/ContourLevels.so
ccpnmr/c/ContourStyle.so
ccpnmr/c/PeakList.so
ccpnmr/c/SliceFile.so
ccpnmr/c/WinPeakList.so
ccpnmr/c/AtomCoordList.so
ccpnmr/c/AtomCoord.so
ccpnmr/c/Bacus.so
ccpnmr/c/CloudUtil.so
ccpnmr/c/DistConstraintList.so
ccpnmr/c/DistConstraint.so
ccpnmr/c/DistForce.so
ccpnmr/c/Dynamics.so
ccpnmr/c/Midge.so
ccp/c/StructAtom.so
ccp/c/StructBond.so
ccp/c/StructStructure.so
ccp/c/StructUtil.so
memops/c/BlockFile.so
memops/c/FitMethod.so
memops/c/GlHandler.so
memops/c/MemCache.so
memops/c/PdfHandler.so
memops/c/PsHandler.so
memops/c/ShapeFile.so
memops/c/StoreFile.so
memops/c/StoreHandler.so
memops/c/TkHandler.so"
for FILE in ${files}; do
fperms 755 ${in_path}/python/${FILE}
done
}
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