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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
# Versioning is output of nmrPipe -help
inherit eutils
DESCRIPTION="Spectral visualisation, analysis and Fourier processing"
HOMEPAGE="http://spin.niddk.nih.gov/bax/software/NMRPipe/"
SRC_URI="
NMRPipeX.tZ
valpha_all.tar
talos.tZ
dyn.tZ
acme.tar.Z
binval.com
install.com"
SLOT="0"
LICENSE="as-is"
# Right now, precompiled executables are only available for Linux on the
# x86 architecture. The maintainer chose to keep the sources closed, but
# says he will gladly provide precompiled executables for other platforms
# if there are such requests.
KEYWORDS="-* ~amd64 ~x86"
IUSE=""
RESTRICT="fetch"
DEPEND="app-shells/tcsh"
RDEPEND="${DEPEND}
app-editors/nedit
dev-lang/tk
dev-tcltk/blt
sys-libs/libtermcap-compat
sys-libs/ncurses
x11-libs/libX11
amd64? (
app-emulation/emul-linux-x86-baselibs
app-emulation/emul-linux-x86-xlibs
)
x86? ( x11-libs/xview )"
S="${WORKDIR}"
NMRBASE="/opt/${PN}"
ENMRBASE="${EPREFIX}/${NMRBASE}"
pkg_nofetch() {
einfo "Please visit:"
einfo "\t${HOMEPAGE}"
einfo
einfo "Contact the author, then download the following files:"
for i in ${A}; do
einfo "\t${i}"
done
einfo
einfo "Place the downloaded files in your distfiles directory:"
einfo "\t${DISTDIR}"
}
src_unpack() {
# The installation script will unpack the package. We just provide symlinks
# to the archive files, ...
for i in valpha_all.tar talos.tZ NMRPipeX.tZ dyn.tZ acme.tar.Z; do
ln -s "${DISTDIR}"/${i} ${i}
done
# ... copy the installation scripts ...
cp "${DISTDIR}"/{binval.com,install.com} .
# ... and make the installation scripts executable.
chmod +x binval.com install.com
# Unset DISPLAY to avoid the interactive graphical test.
# This just unpacks the stuff
env DISPLAY="" csh ./install.com +type linux9 +dest "${S}"/NMR || die
epatch "${FILESDIR}"/${PV}-lib.patch
mv -v nmrbin.linux9/nmr{W,w}ish || die
}
src_install() {
use prefix || ED="${D}"
cat >> "${T}"/nmrWish <<- EOF
#!/bin/csh -f
setenv NMRBIN \${NMRBASE}/bin/
setenv NMRLIB \${NMRBIN}/lib
setenv AUXLIB \${NMRBIN}/openwin/lib
setenv TCLPATH \${NMRBASE}/com
setenv TCL_LIBRARY \${NMRBASE}/nmrtcl/tcl8.4
setenv TK_LIBRARY \${NMRBASE}/nmrtcl/tk8.4
setenv BLT_LIBRARY \${NMRBASE}/nmrtcl/blt2.4
setenv NMRPIPE_TCL_LIB \${NMRBASE}/nmrtcl/tcl8.4
setenv NMRPIPE_TK_LIB \${NMRBASE}/nmrtcl/tk8.4
setenv NMRPIPE_BLT_LIB \${NMRBASE}/nmrtcl/blt2.4
if (!(\$?LD_LIBRARY_PATH)) then
setenv LD_LIBRARY_PATH \${NMRLIB}:\${AUXLIB}
else
setenv LD_LIBRARY_PATH \${NMRLIB}:\${LD_LIBRARY_PATH}:\${AUXLIB}
endif
nmrwish \$*
EOF
# Remove the symlinks for the archives and the installation scripts.
for i in ${A}; do
rm ${i} || die "Failed to remove archive symlinks."
done
# Remove some of the bundled applications and libraries; they are provided by Gentoo instead.
# rm -r nmrbin.linux9/{lib/{libBLT24.so,libolgx.so*,libxview.so*,*.timestamp},*timestamp,xv,gnuplot*,rasmol*,nc,nedit} \
rm -r nmrbin.linux9/{lib/*.timestamp,*timestamp,xv,gnuplot*,rasmol*,nc,nedit} \
nmrbin.{linux,mac,sgi6x,sol,winxp} nmruser format \
|| die "Failed to remove unnecessary libraries."
# As long as xview is not fixed for amd64 we do this
use amd64 || rm nmrbin.linux9/lib/{libxview.so*,libolgx.so*}
# Remove the initialisation script generated during the installation.
# It contains incorrect hardcoded paths; only the "nmrInit.com" script
# should be used.
rm com/nmrInit.linux9.com || die "Failed to remove broken init script."
# Remove installation log files.
rm README_NMRPIPE_USERS *.log || die "Failed to remove installation log."
# Remove unused binaries
rm talos/bin/TALOS.{linux,mac,sgi6x,winxp} pdb/misc/addSeg || die
# Set the correct path to NMRPipe in the auxiliary scripts.
for i in $(find com/ dynamo/surface/misc/ nmrtxt/ talos/misc -type f); do
sed -e "s%/u/delaglio%${ENMRBASE}%" -i ${i} || die \
"Failed patching scripts."
done
sed -i "s:${WORKDIR}:${ENMRBASE}:g" com/font.com || die
sed \
-e "s:/opt/nmrpipe:${EPREFIX}/opt/nmrpipe:g" \
"${FILESDIR}"/env-${PN}-new \
> env-${PN}-new
newenvd env-${PN}-new 40${PN} || die "Failed to install env file."
insinto ${NMRBASE}
doins -r * || die "Failed to install application."
dosym nmrbin.linux9 ${NMRBASE}/bin || die \
"Failed to symlink binaries."
# fperms does not chmod nmrwish
# fperms -v 775 ${NMRBASE}/{talos/bin,nmrbin.linux9,com,dynamo/tcl}/* || die
chmod -c 775 "${ED}"/${NMRBASE}/{talos/bin,nmrbin.linux9,com,dynamo/tcl}/* || die
exeinto ${NMRBASE}/nmrbin.linux9
doexe "${T}"/nmrWish || die
}
#pkg_postinst() {
# ewarn "Before using NMRPipe applications, users must source the following"
# ewarn "csh script, which will set the necessary environment variables:"
# ewarn "\t${NMRBASE}/com/nmrInit.com"
# ewarn
# ewarn "Be aware that this script redefines the locations of the Tcl"
# ewarn "libraries. This could break other non-NMRPipe Tcl applications"
# ewarn "run in the same session."
# ewarn
# ewarn "Using Dynamo does not require running an additional initialisation"
# ewarn "script. The necessary environment variables should already be set."
#}
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