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# Copyright 1999-2009 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
EAPI="2"
inherit fortran base toolchain-funcs versionator
DESCRIPTION="Macromolecular crystallographic refinement program"
HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/"
SRC_URI="${HOMEPAGE}data/refmac_stable/refmac_${PV}.tar.gz
test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
SLOT="0"
LICENSE="ccp4"
KEYWORDS="~amd64 ~x86"
IUSE="test"
RESTRICT="mirror"
RDEPEND="virtual/lapack
virtual/blas
sci-libs/ccp4-libs"
DEPEND="${RDEPEND}"
S="${WORKDIR}"
PATCHES=(
"${FILESDIR}"/$(get_version_component_range 1-2 ${PV})-allow-dynamic-linking.patch
)
src_prepare() {
base_src_prepare
use test && epatch "${FILESDIR}"/test.log.patch
}
src_compile() {
emake \
FC=$(tc-getFC) \
CC=$(tc-getCC) \
CXX=$(tc-getCXX) \
COPTIM="${CFLAGS}" \
FOPTIM="${FFLAGS:- -O2}" \
VERSION="" \
XFFLAGS="-fno-second-underscore" \
LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
LLIBLAPACK="-llapack -lblas" \
|| die
}
src_test() {
einfo "Starting tests ..."
export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
export CCP4_TEST="${WORKDIR}"/test-framework
export CCP4_SCR="${T}"
ln -sf refmac "${S}"/refmac5
sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
ccp4-run-thorough-tests -v test_refmac5 || die
}
src_install() {
for i in refmac libcheck makecif; do
dobin ${i} || die
done
dosym refmac /usr/bin/refmac5 || die
dodoc refmac_keywords.pdf bugs_and_features.pdf || die
}
|
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