blob: 139641ec814df17b3462839bcdc4440407eaa8a9 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
|
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
# boinc support is BROKEN !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
EAPI=5
inherit eutils multilib prefix scons-utils toolchain-funcs versionator
#MY_P="${PN}$(get_major_version)_source"
MY_P="${PN}${PV}_source"
DESCRIPTION="Prediction and design of protein structures, folding mechanisms, and protein-protein interactions"
HOMEPAGE="http://www.rosettacommons.org/"
SRC_URI="${MY_P}.tgz patch_rosetta3.4_to_CSROSETTA3_ver1.3.txt"
LICENSE="|| ( rosetta-academic rosetta-commercial )"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="boinc +boost custom-cflags debug doc float +lange mpi +openmp X"
REQUIRED_USE="?? ( mpi boinc )"
RESTRICT="fetch"
RDEPEND="
dev-db/cppdb
mpi? ( virtual/mpi )
boinc? ( sci-misc/boinc[X?] )
boost? ( dev-libs/boost )
sci-libs/rosetta-db"
DEPEND="${RDEPEND}
dev-util/scons
doc? ( app-doc/doxygen )
X? ( media-libs/freeglut )"
MYCONF=""
S="${WORKDIR}/${PN}_source"
pkg_nofetch() {
einfo "Go to ${HOMEPAGE} and get ${A}"
einfo "which must be placed in ${DISTDIR}"
}
src_prepare() {
local myCXXFLAGS
local myLDFLAGS
use custom-cflags || \
export CXXFLAGS="-O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -pipe"
export LD_LIBRARY_PATH=""
use lange && \
epatch \
"${DISTDIR}"/patch_${PN}${PV}_to_CSROSETTA3_ver1.3.txt \
"${FILESDIR}"/${P}-lange-fix.patch
epatch \
"${FILESDIR}"/${P}-platform.patch \
"${FILESDIR}"/${P}-user-settings.patch \
"${FILESDIR}"/${P}-fix-valgrind.patch \
"${FILESDIR}"/${P}-boinc.patch \
"${FILESDIR}"/${P}-boost.patch \
"${FILESDIR}"/${P}-boost157.patch \
"${FILESDIR}"/${P}-gcc4.789.patch
eprefixify tools/build/*
rm bin/* external/{dbio,scons-local,lib} -rfv || die
find external/boost_1_46_1 -name "*.hpp" -delete || die
for i in ${CXXFLAGS}; do
myCXXFLAGS="${myCXXFLAGS} \"${i/-/}\","
done
for i in ${LDFLAGS}; do
myLDFLAGS="${myLDFLAGS} \"${i/-/}\","
done
sed \
-e "s:GENTOO_CXXFLAGS:${myCXXFLAGS}:g" \
-e "s:GENTOO_LDFLAGS:${myCXXFLAGS} ${myLDFLAGS}:g" \
-e "s:GENTOO_LIBDIR:$(get_libdir):g" \
-e "/program_path/s:#::g" \
-i tools/build/user.settings || die
tc-export CC CXX
if use mpi; then
sed \
-e 's:mpiCC:mpicxx:g' \
-i tools/build/basic.settings || die
sed \
-e "/cxx/d" \
-i tools/build/user.settings || die
fi
}
src_configure() {
local myextras=""
local mymode=""
local mycxx=""
use boinc && EXTRAS="boinc"
use boost && EXTRAS=$(my_list_append "${EXTRAS}" "boost")
use boost && EXTRAS=$(my_list_append "${EXTRAS}" "boost_thread")
use float && EXTRAS=$(my_list_append "${EXTRAS}" "rosetta_float")
use openmp && EXTRAS=$(my_list_append "${EXTRAS}" "omp")
use X && EXTRAS=$(my_list_append "${EXTRAS}" "graphics")
use mpi && EXTRAS=$(my_list_append "${EXTRAS}" "mpi")
COMPILER=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
mycxx="cxx=${COMPILER}"
test -n "${EXTRAS}" && myextras="extras=${EXTRAS}"
if use debug; then
mymode="debug"
else
mymode="release"
fi
MYCONF="mode=${mymode} ${myextras} ${mycxx}"
}
src_compile() {
einfo "running 'scons bin cat=src ${MYCONF}' ..."
escons bin cat=src ${MYCONF}
if use doc; then
einfo "running 'scons ${MYCONF} cat=doc' ..."
scons ${MYCONF} cat=doc || die "scons failed to build documentation"
fi
}
src_install() {
dolib.so build/src/release/linux/*/*/*/*/*/${EXTRAS//,/-}/*.so*
use doc && dohtml build/doc/rosetta++/docs/*
cd bin || die
for BIN in *; do
newbin ${BIN} ${BIN%%.*} || die "could not install rosetta program files"
done
if [[ -e "${ED}"/usr/bin/cluster ]]; then
mv "${ED}"/usr/bin/cluster{,-${PN}} || die
fi
if [[ -e "${ED}"/usr/bin/benchmark ]]; then
mv "${ED}"/usr/bin/benchmark{,-${PN}} || die
fi
}
my_filter_option() {
local value="$1"
local exp="$2"
local result=`echo ${value} | sed -e s/${exp}//g`
echo "${result}"
return 0;
}
my_list_append() {
local old_value="$1"
local new_value="$2"
test -n "${old_value}" && old_value="${old_value},"
echo "${old_value}${new_value}"
return 0;
}
|
GitWeb