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# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $
# boinc support is BROKEN !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
EAPI=5
inherit eutils multilib prefix scons-utils toolchain-funcs versionator
#MY_P="${PN}$(get_major_version)_source"
MY_P="${PN}${PV}_source"
DESCRIPTION="Prediction and design of protein structures, folding mechanisms, and protein-protein interactions"
HOMEPAGE="http://www.rosettacommons.org/"
SRC_URI="${MY_P}.tgz"
LICENSE="|| ( rosetta-academic rosetta-commercial )"
SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
IUSE="boinc +boost custom-flags debug doc float mpi +openmp X"
REQUIRED_USE="?? ( mpi boinc )"
RESTRICT="fetch"
RDEPEND="
dev-db/cppdb
mpi? ( virtual/mpi )
boinc? ( sci-misc/boinc[X?] )
boost? ( dev-libs/boost )
sci-libs/rosetta-db"
DEPEND="${RDEPEND}
dev-util/scons
doc? ( app-doc/doxygen )
X? ( media-libs/freeglut )"
MYCONF=""
S="${WORKDIR}/${PN}_source"
pkg_nofetch() {
einfo "Go to ${HOMEPAGE} and get ${A}"
einfo "which must be placed in ${DISTDIR}"
}
src_prepare() {
local myCXXFLAGS
local myLDFLAGS
use custom-flags || \
export CXXFLAGS="-O3 -ffast-math -funroll-loops -finline-functions -finline-limit=20000 -pipe"
epatch \
"${FILESDIR}"/${P}-platform.patch \
"${FILESDIR}"/${P}-user-settings.patch \
"${FILESDIR}"/${P}-fix-valgrind.patch \
"${FILESDIR}"/${P}-boinc.patch \
"${FILESDIR}"/${P}-boost.patch \
"${FILESDIR}"/${P}-gcc4.7.patch
eprefixify tools/build/*
rm bin/* external/{dbio,scons-local,lib} -rfv || die
find external/boost_1_46_1 -name "*.hpp" -delete || die
for i in ${CXXFLAGS}; do
myCXXFLAGS="${myCXXFLAGS} \"${i/-/}\","
done
for i in ${LDFLAGS}; do
myLDFLAGS="${myLDFLAGS} \"${i/-/}\","
done
sed \
-e "s:GENTOO_CXXFLAGS:${myCXXFLAGS}:g" \
-e "s:GENTOO_LDFLAGS:${myCXXFLAGS} ${myLDFLAGS}:g" \
-e "s:GENTOO_LIBDIR:$(get_libdir):g" \
-i tools/build/user.settings || die
if use mpi; then
sed \
-e 's:mpiCC:mpicxx:g' \
-i tools/build/basic.settings || die
fi
tc-export CC CXX
}
src_configure() {
local myextras=""
local mymode=""
local mycxx=""
use boinc && EXTRAS="boinc"
use boost && EXTRAS=$(my_list_append "${EXTRAS}" "boost")
use boost && EXTRAS=$(my_list_append "${EXTRAS}" "boost_thread")
use float && EXTRAS=$(my_list_append "${EXTRAS}" "rosetta_float")
use openmp && EXTRAS=$(my_list_append "${EXTRAS}" "omp")
use X && EXTRAS=$(my_list_append "${EXTRAS}" "graphics")
use mpi && EXTRAS=$(my_list_append "${EXTRAS}" "mpi")
COMPILER=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
mycxx="cxx=${COMPILER}"
test -n "${EXTRAS}" && myextras="extras=${EXTRAS}"
if use debug; then
mymode="debug"
else
mymode="release"
fi
MYCONF="mode=${mymode} ${myextras} ${mycxx}"
}
src_compile() {
einfo "running 'scons bin cat=src ${MYCONF}' ..."
escons bin cat=src ${MYCONF}
if use doc; then
einfo "running 'scons ${MYCONF} cat=doc' ..."
scons ${MYCONF} cat=doc || die "scons failed to build documentation"
fi
}
src_install() {
dolib.so build/src/release/linux/*/*/*/*/*/${EXTRAS//,/-}/*.so*
use doc && dohtml build/doc/rosetta++/docs/*
cd bin || die
for BIN in *; do
newbin ${BIN} ${BIN%%.*} || die "could not install rosetta program files"
done
mv "${ED}"/usr/bin/cluster{,-${PN}} || die
mv "${ED}"/usr/bin/benchmark{,-${PN}} || die
}
my_filter_option() {
local value="$1"
local exp="$2"
local result=`echo ${value} | sed -e s/${exp}//g`
echo "${result}"
return 0;
}
my_list_append() {
local old_value="$1"
local new_value="$2"
test -n "${old_value}" && old_value="${old_value},"
echo "${old_value}${new_value}"
return 0;
}
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