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# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
PYTHON_COMPAT=( python3_{10..11} )
VIRTUALX_REQUIRED="manual"
inherit cmake python-single-r1 virtualx
MY_PN="InsightToolkit"
MY_P="${MY_PN}-${PV}"
GLI_HASH="89da9305f5750d3990ca9fd35ecc5ce0b39c71a6"
IAD_HASH="24825c8d246e941334f47968553f0ae388851f0c"
TEST_HASH="7ab9d41ad5b42ccbe8adcaf0b24416d439a264d0"
declare -a GLI_TEST_HASHES=(
"a5e11ea71164ff78c65fcf259db01ea5db981a9d868e60045ff2bffca92984df1174bf984a1076e450f0d5d69b4f0191ed1a61465c220e2c91a893b5df150c0a"
"bcdbb347f3704262d1f00be7179d6a0a6e68aed56c0653e8072ee5a94985c713bd229c935b1226a658af84fb7f1fffc2458c98364fc35303a2303b12f9f7ce2f"
)
GLI_TEST_SRC=""
for i in "${GLI_TEST_HASHES[@]}"; do
GLI_TEST_SRC+="https://data.kitware.com/api/v1/file/hashsum/sha512/${i}/download -> ${PN}-test-${i} "
done
DESCRIPTION="NLM Insight Segmentation and Registration Toolkit"
HOMEPAGE="https://itk.org"
SRC_URI="
https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/${MY_P}.tar.gz
https://github.com/InsightSoftwareConsortium/ITKGenericLabelInterpolator/archive/${GLI_HASH}.tar.gz -> ITKGenericLabelInterpolator-${PV}.tar.gz
https://github.com/ntustison/ITKAdaptiveDenoising/archive/${IAD_HASH}.tar.gz -> ITKAdaptiveDenoising-${PV}.tar.gz
test? (
https://github.com/InsightSoftwareConsortium/ITK/releases/download/v${PV}/InsightData-${PV}.tar.gz
https://github.com/InsightSoftwareConsortium/ITKTestingData/archive/${TEST_HASH}.tar.gz -> ${P}-testingdata.tar.gz
${GLI_TEST_SRC}
)
"
LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="debug doc examples fftw itkv4-compat python review test vtkglue"
REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
RESTRICT="!test? ( test )"
RDEPEND="
dev-cpp/eigen:3
dev-libs/double-conversion:0=
dev-libs/expat:0=
media-libs/openjpeg:2
media-libs/libpng:0=
media-libs/tiff:0=[jpeg]
sci-libs/dcmtk:0=
sci-libs/hdf5:0=[cxx]
sci-libs/gdcm:0=
sys-libs/zlib:0=
media-libs/libjpeg-turbo:0=
fftw? ( sci-libs/fftw:3.0= )
vtkglue? (
sci-libs/vtk:0=[rendering]
python? (
sci-libs/vtk:0=[python,${PYTHON_SINGLE_USEDEP}]
)
)
python? ( ${PYTHON_DEPS} )
"
DEPEND="${RDEPEND}
sys-apps/coreutils
python? (
>=dev-lang/swig-2.0:0
dev-libs/castxml
)
doc? ( app-text/doxygen )
"
BDEPEND="
test? (
vtkglue? ( ${VIRTUALX_DEPEND} )
python? (
$(python_gen_cond_dep 'dev-python/numpy[${PYTHON_USEDEP}]')
)
)
"
S="${WORKDIR}/${MY_P}"
PATCHES=(
"${FILESDIR}/${P}-upstream-fixes.patch"
"${FILESDIR}/${P}-system-tiff-has-64.patch"
"${FILESDIR}/${P}-fix-castxml-clang-attr-malloc.patch"
"${FILESDIR}/${P}-system-openjpeg.patch"
)
pkg_pretend() {
if [[ -z ${ITK_COMPUTER_MEMORY_SIZE} ]]; then
elog "To tune ITK to make the best use of working memory you can set"
elog " ITK_COMPUTER_MEMORY_SIZE=XX"
elog "in make.conf, default is 1 (unit is GB)"
fi
if use python && [[ -z ${ITK_WRAP_DIMS} ]]; then
elog "For Python language bindings, you can define the dimensions"
elog "you want to create bindings for by setting"
elog " ITK_WRAP_DIMS=X;Y;Z..."
elog "in make.conf, default is 2;3 for 2D and 3D data"
fi
}
src_prepare() {
# drop bundled libs
local -a DROPS=(
DoubleConversion/src/double-conversion
Eigen3/src/itkeigen
Expat/src/expat
GDCM/src/gdcm
JPEG/src/itkjpeg
HDF5/src/itkhdf5
OpenJPEG/src/openjpeg
PNG/src/itkpng
TIFF/src/itktiff
ZLIB/src/itkzlib
)
local x
for x in "${DROPS[@]}"; do
ebegin "Dropping bundled ${x%%/*}"
rm -r "Modules/ThirdParty/${x}" || die
eend $?
done
{
find Modules/ThirdParty -mindepth 2 -maxdepth 2 -type d -name src -printf '%P\n'
printf '%s\n' "${DROPS[@]}" | sed 's,/[^/]*$,,'
} | sort | uniq -u | xargs -n 1 ewarn "Using bundled" || die
# Remote modules
ln -sr "../ITKGenericLabelInterpolator-${GLI_HASH}" Modules/External/ITKGenericLabelInterpolator || die
ln -sr "../ITKAdaptiveDenoising-${IAD_HASH}" Modules/External/ITKAdaptiveDenoising || die
cmake_src_prepare
if use test; then
cp -rf "../ITKTestingData-${TEST_HASH}/"* ".ExternalData/" || die
mv "../ITKTestingData-${TEST_HASH}" "${BUILD_DIR}/.ExternalData" || die
for i in "${GLI_TEST_HASHES[@]}"; do
cp "${DISTDIR}/${PN}-test-${i}" ".ExternalData/SHA512/${i}" || die
cp "${DISTDIR}/${PN}-test-${i}" "${BUILD_DIR}/.ExternalData/SHA512/${i}" || die
done
fi
}
src_configure() {
local mycmakeargs=(
-DITK_BUILD_DOCUMENTATION="$(usex doc ON OFF)"
-DITK_INSTALL_DOC_DIR="share/doc/${P}"
-DBUILD_EXAMPLES="$(usex examples ON OFF)"
-DBUILD_SHARED_LIBS=ON
-DBUILD_TESTING="$(usex test ON OFF)"
-Ddouble-conversion_INCLUDE_DIRS="${EPREFIX}/usr/include/double-conversion"
-DExternalData_OBJECT_STORES="${WORKDIR}/InsightToolkit-${PV}/.ExternalData"
-DGDCM_USE_SYSTEM_OPENJPEG=ON
-DITK_FORBID_DOWNLOADS:BOOL=ON
-DITK_INSTALL_LIBRARY_DIR=$(get_libdir)
-DITK_USE_REVIEW="$(usex review ON OFF)"
-DITK_USE_SYSTEM_DCMTK=ON
-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
-DITK_USE_SYSTEM_CASTXML=ON
-DITK_USE_SYSTEM_EIGEN=ON
-DITK_USE_SYSTEM_EXPAT=ON
-DITK_USE_SYSTEM_GDCM=ON
-DITK_USE_SYSTEM_HDF5=ON
-DITK_USE_SYSTEM_JPEG=ON
-DITK_USE_SYSTEM_OPENJPEG=ON
-DITK_USE_SYSTEM_PNG=ON
-DITK_USE_SYSTEM_SWIG=ON
-DITK_USE_SYSTEM_TIFF=ON
-DITK_USE_SYSTEM_ZLIB=ON
-DITK_USE_KWSTYLE=OFF
-DITK_BUILD_DEFAULT_MODULES=ON
-DITK_COMPUTER_MEMORY_SIZE="${ITK_COMPUTER_MEMORY_SIZE:-1}"
-DModule_AdaptiveDenoising:BOOL=ON
-DModule_GenericLabelInterpolator:BOOL=ON
-DModule_ITKReview:BOOL=ON
-DWRAP_ITK_JAVA=OFF
-DWRAP_ITK_TCL=OFF
-DITKV4_COMPATIBILITY:BOOL=$(usex itkv4-compat)
)
if use fftw; then
mycmakeargs+=(
-DUSE_FFTWD=ON
-DUSE_FFTWF=ON
-DUSE_SYSTEM_FFTW=ON
-DITK_WRAP_double=ON
-DITK_WRAP_vector_double=ON
-DITK_WRAP_covariant_vector_double=ON
-DITK_WRAP_complex_double=ON
)
fi
if use vtkglue; then
mycmakeargs+=(
-DModule_ITKVtkGlue=ON
)
fi
if use python; then
mycmakeargs+=(
-DITK_WRAP_PYTHON=ON
-DPython3_EXECUTABLE="${PYTHON}"
-DITK_WRAP_DIMS="${ITK_WRAP_DIMS:-2;3}"
)
else
mycmakeargs+=(
-DITK_WRAP_PYTHON=OFF
)
fi
cmake_src_configure
}
src_install() {
cmake_src_install
if use examples; then
docinto examples
docompress -x /usr/share/doc/${PF}/examples
dodoc -r "${S}"/Examples/*
fi
echo "ITK_DATA_ROOT=${EPREFIX}/usr/share/${PN}/data" > ${T}/40${PN} || die
local ldpath="${EPREFIX}/usr/$(get_libdir)/InsightToolkit"
if use python; then
echo "PYTHONPATH=${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/Python" >> "${T}"/40${PN} || die
ldpath="${ldpath}:${EPREFIX}/usr/$(get_libdir)/InsightToolkit/WrapITK/lib"
fi
echo "LDPATH=${ldpath}" >> "${T}"/40${PN} || die
doenvd "${T}"/40${PN}
if use doc; then
cd "${WORKDIR}"/html || die
rm *.md5 || die "Failed to remove superfluous hashes"
einfo "Installing API docs. This may take some time."
docinto api-docs
dodoc -r *
fi
use python && python_optimize
}
src_test() {
if use vtkglue; then
virtx cmake_src_test
else
cmake_src_test
fi
}
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