blob: c371d5432c53114561c34c0b1ebe00bc08d8f543 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
|
# Copyright 2019 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
inherit autotools git-r3
DESCRIPTION="Library for biobambam2"
HOMEPAGE="https://github.com/gt1/libmaus"
EGIT_REPO_URI="https://gitlab.com/german.tischler/libmaus2"
LICENSE="BSD-2 GPL-2 GPL-3 MIT ZLIB" # BUG: incomplete list of licenses, see AUTHORS
SLOT="0"
KEYWORDS=""
IUSE="cpu_flags_x86_ssse3 cpu_flags_x86_sse4_1 cpu_flags_x86_sse4_2"
DEPEND="
!sci-libs/libmaus
>=sci-libs/io_lib-1.14.11
app-arch/snappy
sci-libs/fftw
sci-libs/hdf5
net-libs/gnutls
dev-libs/nettle"
# --with-daligner
# --with-irods
src_prepare() {
eautoreconf
eapply_user
}
src_configure(){
local CONFIG_OPTS
use cpu_flags_x86_ssse3 && CONFIG_OPTS+=( --enable-ssse3 )
( use cpu_flags_x86_sse4_1 || use cpu_flags_x86_sse4_2 ) && CONFIG_OPTS+=( --enable-sse4 )
econf --with-snappy --with-io_lib $CONFIG_OPTS \
--with-lzma --with-gnutls --with-nettle --with-hdf5 --with-gmp --with-fftw
}
pkg_postinst(){
einfo "The io_lib, snappy dependencies are not strictly needed"
einfo "but were forced for optimal libmaus2 performance."
einfo "igzip is only used if gzip level is set to 11."
}
|
GitWeb
