path: root/sci-mathematics/netgen/files/debian-netgen_4.4-7.patch

--- ./ngsolve/basiclinalg/calcinverse.cpp
+++ ./ngsolve/basiclinalg/calcinverse.cpp
@@ -9,7 +9,7 @@
   {
     double sum = 0;
     for (int i = 0; i < N; i++)
-      sum += abs(m(i,i));
+      sum += std::abs(m(i,i));
     return sum;
   }
   inline double abs (double a)
--- ./ng.tcl
+++ ./ng.tcl
@@ -7,7 +7,7 @@
 
 set progname "NETGEN"
 
-set ngdir ""
+set ngdir "/usr/share/netgen"
 if { [lsearch [array names env] NETGENDIR] != -1 } {
     set ngdir $env(NETGENDIR) 
 }
--- ./togl/LICENSE.togl
+++ ./togl/LICENSE.togl
@@ -0,0 +1,27 @@
+This software is copyrighted by Brian Paul (brian@mesa3d.org)
+and Benjamin Bederson (bederson@cs.umd.edu).  The following
+terms apply to all files associated with the software unless explicitly
+disclaimed in individual files.
+
+The authors hereby grant permission to use, copy, modify, distribute,
+and license this software and its documentation for any purpose, provided
+that existing copyright notices are retained in all copies and that this
+notice is included verbatim in any distributions. No written agreement,
+license, or royalty fee is required for any of the authorized uses.
+Modifications to this software may be copyrighted by their authors
+and need not follow the licensing terms described here, provided that
+the new terms are clearly indicated on the first page of each file where
+they apply.
+
+IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY
+FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES
+ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY
+DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGE.
+
+THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES,
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT.  THIS SOFTWARE
+IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE
+NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
+MODIFICATIONS.
--- ./togl/license.terms
+++ ./togl/license.terms
@@ -0,0 +1,39 @@
+This software is copyrighted by the Regents of the University of
+California, Sun Microsystems, Inc., Scriptics Corporation,
+and other parties.  The following terms apply to all files associated
+with the software unless explicitly disclaimed in individual files.
+
+The authors hereby grant permission to use, copy, modify, distribute,
+and license this software and its documentation for any purpose, provided
+that existing copyright notices are retained in all copies and that this
+notice is included verbatim in any distributions. No written agreement,
+license, or royalty fee is required for any of the authorized uses.
+Modifications to this software may be copyrighted by their authors
+and need not follow the licensing terms described here, provided that
+the new terms are clearly indicated on the first page of each file where
+they apply.
+
+IN NO EVENT SHALL THE AUTHORS OR DISTRIBUTORS BE LIABLE TO ANY PARTY
+FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR CONSEQUENTIAL DAMAGES
+ARISING OUT OF THE USE OF THIS SOFTWARE, ITS DOCUMENTATION, OR ANY
+DERIVATIVES THEREOF, EVEN IF THE AUTHORS HAVE BEEN ADVISED OF THE
+POSSIBILITY OF SUCH DAMAGE.
+
+THE AUTHORS AND DISTRIBUTORS SPECIFICALLY DISCLAIM ANY WARRANTIES,
+INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE, AND NON-INFRINGEMENT.  THIS SOFTWARE
+IS PROVIDED ON AN "AS IS" BASIS, AND THE AUTHORS AND DISTRIBUTORS HAVE
+NO OBLIGATION TO PROVIDE MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR
+MODIFICATIONS.
+
+GOVERNMENT USE: If you are acquiring this software on behalf of the
+U.S. government, the Government shall have only "Restricted Rights"
+in the software and related documentation as defined in the Federal 
+Acquisition Regulations (FARs) in Clause 52.227.19 (c) (2).  If you
+are acquiring the software on behalf of the Department of Defense, the
+software shall be classified as "Commercial Computer Software" and the
+Government shall have only "Restricted Rights" as defined in Clause
+252.227-7013 (c) (1) of DFARs.  Notwithstanding the foregoing, the
+authors grant the U.S. Government and others acting in its behalf
+permission to use and distribute the software in accordance with the
+terms specified in this license. 
--- ./ngtcltk/ngappinit.cpp
+++ ./ngtcltk/ngappinit.cpp
@@ -77,7 +77,7 @@
   if (getenv ("NETGENDIR") && strlen (getenv ("NETGENDIR")))
     ngdir = getenv ("NETGENDIR");
   else
-    ngdir = ".";
+    ngdir = "/usr/share/netgen";
   
   verbose = parameters.GetDefineFlag ("V");
 
--- ./ngtcltk/nghelp.tcl
+++ ./ngtcltk/nghelp.tcl
@@ -1,6 +1,6 @@
 proc print_commandline_help { } {
     
-    puts "Usage: ng { options }"
+    puts "Usage: netgen { options }"
 
     puts "-geofile=filename    Input geometry file (alternative:  ng filename)"
     puts "-meshfile=filename   Output mesh file"
--- ./ngsolve/comp/postproc.cpp
+++ ./ngsolve/comp/postproc.cpp
@@ -9,6 +9,7 @@
 */
 
 #include <comp.hpp>
+#include <fem.hpp>
 
 namespace ngcomp
 {
@@ -274,8 +275,8 @@
 	if (dimflux > 1)
 	  {
 	    FlatMatrix<SCAL> elmat(dnumsflux.Size(), lh);
-	    dynamic_cast<const BlockBilinearFormIntegrator&> (fluxbli)
-	      . Block() . AssembleElementMatrix (felflux, eltrans, elmat, lh);
+	    BlockBilinearFormIntegrator const& fluxbli_ref = dynamic_cast<const BlockBilinearFormIntegrator&> (fluxbli);
+	    fluxbli_ref . Block() . AssembleElementMatrix (felflux, eltrans, elmat, lh);
 	    CholeskyFactors<SCAL> invelmat(elmat);
 
 	    FlatVector<SCAL> hv1(dnumsflux.Size(), lh);
--- ./ngsolve/linalg/order.cpp
+++ ./ngsolve/linalg/order.cpp
@@ -54,7 +54,7 @@
     return ball.Alloc();
   }
 
-  void CliqueEl :: operator delete (void * p, size_t)
+  void CliqueEl :: operator delete (void * p)
   {
     ball.Free (p);
   }
--- ./ngsolve/linalg/order.hpp
+++ ./ngsolve/linalg/order.hpp
@@ -118,7 +118,7 @@
   ///
   void * operator new(size_t);
   ///
-  void operator delete (void *, size_t);
+  void operator delete (void *);
 };
   
 
--- ./ngsolve/basiclinalg/expr3.hpp
+++ ./ngsolve/basiclinalg/expr3.hpp
@@ -851,6 +851,16 @@
 /**
    Inner product
  */
+inline double InnerProduct ( const double& a, const double& b )
+{
+  return a * b;
+}
+
+inline Complex InnerProduct ( const Complex& a, const Complex b)
+{
+  return a * b;
+}
+
 template <class TA, class TB>
 inline typename TA::TSCAL
 InnerProduct (const MatExpr<TA> & a, const MatExpr<TB> & b)
@@ -862,15 +872,6 @@
   return sum;
 }
 
-inline double InnerProduct (double a, double b)
-{
-  return a * b;
-}
-
-inline Complex InnerProduct (Complex a, Complex b)
-{
-  return a * b;
-}
 
 
 /* **************************** Trace **************************** */
@@ -889,6 +890,16 @@
 /* **************************** L2Norm **************************** */
 
 /// Euklidean norm squared
+inline double L2Norm2 (const double& v)
+{
+  return v*v;
+}
+
+inline double L2Norm2 (Complex v)
+{
+  return v.real()*v.real()+v.imag()*v.imag();
+}
+
 template <class TA>
 inline double L2Norm2 (const MatExpr<TA> & v)
 {
@@ -899,17 +910,6 @@
   return sum;
 }
 
-
-inline double L2Norm2 (double v)
-{
-  return v*v;
-}
-
-inline double L2Norm2 (Complex v)
-{
-  return v.real()*v.real()+v.imag()*v.imag();
-}
-
 template <class TA>
 inline double L2Norm (const MatExpr<TA> & v)
 {
--- ./Makefile
+++ ./Makefile
@@ -29,7 +29,7 @@
 # tcltklib = -ltix8.2 -ltk8.4 -ltcl8.4
 #
 #
-syslib = $(tcltklib) -lGL -lGLU -lX11  -lXi -lm  -ldl -lpthread $(SYSLIB2)
+syslib = $(tcltklib) -lGL -lGLU -lX11 -lm  -ldl -lpthread $(SYSLIB2)
 # (maybe you have to remove -ldl)
 #
 #
@@ -49,6 +49,7 @@
 
 # add libs in makefile.mach.$(MACHINE)
 # occlib = -L$(OCCLIB_DIR) -lTKIGES -lTKBRep -lTKSTEP -lTKSTL
+occlib = -L$(OCCLIB_DIR) -lTKIGES -lTKBRep -lTKSTEP -lTKSTL -lTKTopAlgo -lTKG3d -lTKG2d -lTKXSBase -lTKOffset -lTKFillet -lTKGeomBase -lTKGeomAlgo -lTKShHealing -lTKBO -lTKPrim -lTKernel -lTKMath -lTKBool -lXxf86vm
 #
 include $(LIBSRC_DIR)/makefile.mach.$(MACHINE)
 #
@@ -117,7 +120,7 @@
 #
 .PHONY : clean
 clean:
-	-@rm *.o ngtcltk/*.o togl/*.o lib/$(MACHINE)/lib*.a lib/$(MACHINE)/*.o
+	-rm *.o ngtcltk/*.o togl/*.o lib/$(MACHINE)/lib*.a lib/$(MACHINE)/*.o ng
 #
 #
 .PHONY : cleanapp
--- ./libsrc/makefile.mach.LINUX
+++ ./libsrc/makefile.mach.LINUX
@@ -16,12 +16,18 @@
 #
 CFLAGS2 =
 
-CPLUSPLUSFLAGS2 = -O2 -I/usr/include/GL3.5 -DLINUX -DOPENGL \
-	-ftemplate-depth-99 -finline-limit=20000 \
+CPLUSPLUSFLAGS2 = -O2 -I/usr/include/GL -I/usr/include/tcl8.4 -I/usr/include/tk8.4 -I/usr/X11R6/include  \
+        -DLINUX -DOPENGL \
+	-finline-limit=20000 \
 	-funroll-loops  -DNGSOLVE
 
 LINKFLAGS2 =   -L/usr/openwin/lib -L/usr/X11R6/lib -L/usr/lib/GL3.5 -lstdc++ 
 
+OCC_DIR=/opt/OpenCASCADE5.2
+OCCINC_DIR=$(OCC_DIR)/ros/inc
+OCCLIB_DIR=$(OCC_DIR)/ros/lin/lib
+CPLUSPLUSFLAGS2 += -DOCCGEOMETRY -DOCC52 -DUSE_STL_STREAM -DHAVE_IOSTREAM -DHAVE_LIMITS -I$(OCCINC_DIR)
+LINKFLAGS2 += -L$(OCCLIB_DIR) -lTKIGES -lTKBRep -lTKSTEP -lTKSTL -lTKTopAlgo -lTKG3d -lTKG2d -lTKXSBase -lTKOffset -lTKFillet -lTKGeomBase -lTKGeomAlgo -lTKShHealing -lTKBO -lTKPrim -lTKernel -lTKMath -lTKBool
 
 goalngs=goalngs
 
--- ./libsrc/visualization/mvdraw.hpp
+++ ./libsrc/visualization/mvdraw.hpp
@@ -250,6 +250,7 @@
   int seltria;
 };
 
+extern VisualSceneSTLMeshing vsstlmeshing;
 
 
 
--- ./libsrc/visualization/stlmeshing.cpp
+++ ./libsrc/visualization/stlmeshing.cpp
@@ -1062,9 +1062,9 @@
 }
 
 
+VisualSceneSTLMeshing vsstlmeshing;
 
 
-VisualSceneSTLMeshing vsstlmeshing;
 
 #endif