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# Copyright 1999-2021 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
PYTHON_COMPAT=( python3_{7,8} )
DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1 desktop virtualx
DESCRIPTION="The new FSL image viewer, released with FSL 5.0.10"
HOMEPAGE="https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/tree/master"
SRC_URI="
https://git.fmrib.ox.ac.uk/fsl/fsleyes/fsleyes/-/archive/${PV}/${P}.tar.gz
https://github.com/pauldmccarthy/fsleyes/archive/${PV}.tar.gz -> ${P}.tar.gz
"
LICENSE="Apache-2.0"
SLOT="0"
KEYWORDS="~amd64 ~x86"
DEPEND="
test? (
${RDEPEND}
dev-python/mock[${PYTHON_USEDEP}]
)
"
RDEPEND="
>=dev-python/fslpy-3.1[${PYTHON_USEDEP}]
=dev-python/jinja-2*[${PYTHON_USEDEP}]
>=dev-python/matplotlib-1.5.1[${PYTHON_USEDEP}]
>=dev-python/numpy-1.14.0[${PYTHON_USEDEP}]
>=dev-python/pillow-3.2.0[${PYTHON_USEDEP}]
>=dev-python/pyopengl-3.1.0[${PYTHON_USEDEP}]
>=dev-python/pyopengl_accelerate-3.1.0[${PYTHON_USEDEP}]
=dev-python/pyparsing-2*[${PYTHON_USEDEP}]
=dev-python/six-1*[${PYTHON_USEDEP}]
>=dev-python/wxpython-3.0.2.0[${PYTHON_USEDEP}]
>=dev-python/scipy-0.18[${PYTHON_USEDEP}]
>=sci-libs/nibabel-2.3[${PYTHON_USEDEP}]
>=sci-visualization/fsleyes-widgets-0.8.4[${PYTHON_USEDEP}]
>=sci-visualization/fsleyes-props-1.6.7[${PYTHON_USEDEP}]
"
PATCHES=(
"${FILESDIR}/${PN}-0.26.2-fsldir.patch"
"${FILESDIR}/${PN}-0.32.0-tests_timeout.patch"
"${FILESDIR}/${PN}-0.32.0-tests_fail.patch"
)
distutils_enable_tests pytest
python_prepare_all() {
# do not depend on pytest-cov
sed -i -e '/addopts/d' setup.cfg || die
# Fatal Python error: Segmentation fault
sed -i -e 's:test_crop:_&:' \
tests/test_ortho_cropmode.py || die
sed -i -e 's:test_fillSelection:_&:' \
tests/test_ortho_editmode.py || die
# KeyError: 'Unknown atlas ID: harvardoxford-cortical'
sed -i -e 's:test_atlaspanel_toggleOverlay:_&:' \
tests/test_atlaspanel.py || die
# This hangs forever
sed -i -e 's:test_lightbox:_&:' \
tests/test_layouts.py || die
distutils-r1_python_prepare_all
}
python_install_all() {
distutils-r1_python_install_all
doicon userdoc/images/fsleyes_icon.png
local size
for size in 16 32 128 256 512 ; do
newicon -s ${size} assets/icons/app_icon/${PN}.iconset/icon_${size}x${size}.png "${PN}.png"
done
make_desktop_entry fsleyes FSLeyes "${PN}"
}
pkg_postinst() {
gnome2_icon_cache_update
}
pkg_postrm() {
gnome2_icon_cache_update
}
python_test() {
virtx pytest -vv || die
}
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