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authorMichał Górny <mgorny@gentoo.org>2019-10-14 22:05:03 +0200
committerMichał Górny <mgorny@gentoo.org>2019-10-14 22:06:59 +0200
commit48cfc31bc0bea751f2ba1401346557bcb7fcc833 (patch)
tree541db240650b9726bcb84fc8de105989f4923d38
parentnet-misc/pump: Remove last-rited pkg (diff)
downloadgentoo-48cfc31bc0bea751f2ba1401346557bcb7fcc833.tar.gz
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sci-biology/goby-cpp: Remove last-rited pkg
Signed-off-by: Michał Górny <mgorny@gentoo.org>
-rw-r--r--profiles/package.mask6
-rw-r--r--sci-biology/goby-cpp/Manifest4
-rw-r--r--sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild25
-rw-r--r--sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild25
-rw-r--r--sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild42
-rw-r--r--sci-biology/goby-cpp/metadata.xml8
6 files changed, 0 insertions, 110 deletions
diff --git a/profiles/package.mask b/profiles/package.mask
index 16ba8d007333..7cd8da307313 100644
--- a/profiles/package.mask
+++ b/profiles/package.mask
@@ -446,12 +446,6 @@ dev-go/cli
dev-go/go-gitlab-client
dev-go/toml
-# Michał Górny <mgorny@gentoo.org> (2019-09-14)
-# sci-biology/goby has been removed. This package makes little sense
-# without it.
-# Removal in 30 days.
-sci-biology/goby-cpp
-
# Thomas Sachau <tommy@gentoo.org> (2019-09-14)
# Freemail has been completly rewritten so the current
# ebuild does no longer work for it. In addition the source
diff --git a/sci-biology/goby-cpp/Manifest b/sci-biology/goby-cpp/Manifest
deleted file mode 100644
index 2bd240a998af..000000000000
--- a/sci-biology/goby-cpp/Manifest
+++ /dev/null
@@ -1,4 +0,0 @@
-DIST goby-cpp-2.0.1-files.tar.bz2 8354 BLAKE2B 0169e1bbcdc27f359cde47df708546dd6af0a68334295b247a6aac9122b7e9b1ee590fe0b57052c642b7e25478f5b118c70bec0c4b4af3694ab0f68c1c9ea73a SHA512 6f0cf466688cdbe9fe646cdff78dd0721fd0b0819c354c63e7c39c45895c319754cdadf23aeb9d544b0b2c68f1168583cb541ec160ba7f567fa0218dbad38e1e
-DIST goby_1.9.7.3-cpp.zip 127215 BLAKE2B 0673c36b503a6daee5fdaaf96fb415277502c0a49e530eb39983d4718f4a1d8eb9a6ff0a3202413c358600aafc2bf73482be12462f798923c13e19a6bcd590b1 SHA512 56bf190224b6f22e0578cea4cc950e52e746655c75ffc13675276787b4d0ced682f891f6ecf7af3cf124b535ac3afc8711b0ecff44d6fd25fe521de7371c3486
-DIST goby_1.9.8.1-cpp.zip 134904 BLAKE2B 800f3bcbe9f721bfb636f514630fb1ceba3a1fe41616f63fc15f9f2a24394ef9be90419ccad0c9bd8b29100eeaea57659ba013042cf4a11b6038fc6dee782619 SHA512 d31cd7f0be19074bfe8da74d9f2510f0e0f15fe6c485bbed8520052468d2cd2f1bc5fcad8b0d6a1586f5acde73db326059f45994ecfbb5fb6c09692d8e155190
-DIST goby_2.0.1-cpp.zip 177718 BLAKE2B 666b50fdc199693f8a4f9b6007f6609e91ab6093b643da88e580c9a3438a150cd7be78d2b5dcdd2fe905263d32ebbac1e0e47dbc637fd5d59f877e7cbdaaeeb2 SHA512 992bd10d5538dec1478820f26151dd311f4de13e7947b49f0b06d6cbdd4b71deeb3aa8a4c6a598fb92fbcb9cbf4ff97bf81205c9389d4a0da4443317e48aea9f
diff --git a/sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild b/sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild
deleted file mode 100644
index 1d9228d799dc..000000000000
--- a/sci-biology/goby-cpp/goby-cpp-1.9.7.3.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit autotools
-
-DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=">=dev-libs/protobuf-2.4.1
- >=dev-libs/libpcre-8.12"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/goby_${PV}/cpp"
-
-src_prepare() {
- eautoreconf
-}
diff --git a/sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild b/sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild
deleted file mode 100644
index 5bd75260414e..000000000000
--- a/sci-biology/goby-cpp/goby-cpp-1.9.8.1.ebuild
+++ /dev/null
@@ -1,25 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=4
-
-inherit autotools
-
-DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip"
-
-LICENSE="GPL-3"
-SLOT="0"
-IUSE=""
-KEYWORDS="~amd64 ~x86"
-
-DEPEND=">=dev-libs/protobuf-2.4.1
- >=dev-libs/libpcre-8.12"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/goby_${PV}/cpp"
-
-src_prepare() {
- eautoreconf
-}
diff --git a/sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild b/sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild
deleted file mode 100644
index e74dd6ecede3..000000000000
--- a/sci-biology/goby-cpp/goby-cpp-2.0.1.ebuild
+++ /dev/null
@@ -1,42 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils
-
-DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
-HOMEPAGE="http://campagnelab.org/software/goby/"
-SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip
- https://dev.gentoo.org/~mgorny/dist/${P}-files.tar.bz2"
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE="static-libs"
-
-DEPEND="
- >=dev-libs/protobuf-2.4.1
- >=dev-libs/libpcre-8.12"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${PV}/cpp"
-
-PATCHES=(
- "${WORKDIR}"/${P}-files/${P}-underlinking.patch
-)
-
-src_prepare() {
- sed \
- -e '/BUILD_TIMESTAMP/s:\(goby/timestamp.h\):$(top_srcdir)/src/\1:g' \
- -i src/Makefile.am || die
-
- pushd src/goby > /dev/null || die
- cp "${WORKDIR}"/${P}-files/*.proto . || die
- protoc --cpp_out=. *.proto || die
- popd > /dev/null || die
-
- autotools-utils_src_prepare
-}
diff --git a/sci-biology/goby-cpp/metadata.xml b/sci-biology/goby-cpp/metadata.xml
deleted file mode 100644
index 959160fe46b1..000000000000
--- a/sci-biology/goby-cpp/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
- <maintainer type="project">
- <email>sci-biology@gentoo.org</email>
- <name>Gentoo Biology Project</name>
- </maintainer>
-</pkgmetadata>