dev-perl/Bio-SamTools: Bump to version 1.430.0

- Links against samtools:0.1-legacy series, as even though this code
  previously attempted to use 1.0+, closer inspection indicated
  incomplete linking, missing symbols, and failing tests introduced
  by this attempt. Additionally, upstream EXPLICITLY STATE the lack of
  current support for samtools 1.0

- Restores DIST_TEST as I can now test they work

- Fold swathe of sed commands into patch

Upstream:
- Ship some test files requried for tests to pass

Closes: https://bugs.gentoo.org/611970
Closes: https://bugs.gentoo.org/604950
Package-Manager: Portage-2.3.6, Repoman-2.3.2

1 files changed, 33 insertions, 0 deletions

diff --git a/dev-perl/Bio-SamTools/Bio-SamTools-1.430.0.ebuild b/dev-perl/Bio-SamTools/Bio-SamTools-1.430.0.ebuild
new file mode 100644
index 000000000000..1147cec5a486
--- /dev/null
+++ b/dev-perl/Bio-SamTools/Bio-SamTools-1.430.0.ebuild
@@ -0,0 +1,33 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DIST_AUTHOR=LDS
+DIST_VERSION=1.43
+inherit perl-module toolchain-funcs
+
+DESCRIPTION="Read SAM/BAM database files"
+
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+LICENSE="|| ( Apache-2.0 Artistic-2 GPL-1+ )"
+
+RDEPEND="
+	>=sci-biology/bioperl-1.6.9
+	sci-biology/samtools:0.1-legacy=
+"
+DEPEND="${RDEPEND}
+	virtual/perl-ExtUtils-CBuilder
+	>=dev-perl/Module-Build-0.420.0
+"
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-1.430.0-legacy.patch
+)
+
+src_prepare() {
+	perl-module_src_prepare
+	tc-export CC
+}