proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

6 files changed, 323 insertions, 0 deletions

diff --git a/dev-python/pyfits/Manifest b/dev-python/pyfits/Manifest
new file mode 100644
index 000000000000..6346f5982dc8
--- /dev/null
+++ b/dev-python/pyfits/Manifest
@@ -0,0 +1,2 @@
+DIST pyfits-2.4.0.tar.gz 284236 SHA256 40c21106b86ad01264780409ecb2c8102e80c3eaf2085224f370fc7b3b07ea22 SHA512 cdbcf8b4e178cde8723eb9386a52e59c9d66462479491d0b0ae1d436c91cc476748c00e837477acf9a46791cd4a7517ff649434c33c225ba8a396148e4485fa1 WHIRLPOOL 2c22a63bd180ad68bf3001d539c403147eecc01dc5537f9c1b0be582c79dd87297f91f33809dec6c9f5906396d409af5b4495ef0b68fe6cc03d816a51a286e50
+DIST pyfits-3.3.tar.gz 1646403 SHA256 becb6dcc7e443138b9d239db7a0e8ad939e6e047c2c9ca86e84d0672da425fa1 SHA512 561fe61050e61745054e0e4712c4413e129293b062d2020219b61d648d7093ce6952e1f26da955a1bf570f76ba7eddeb1805c99f679300b072ef6bacc2e4c90a WHIRLPOOL 9b4b5dd236713359a9441e4179486e4b56ec11b7fc25c3abb59d30a6267fe87496601778731ba7ff92c55243621aa58ca493821b83224fde41a79f18c21e485b
diff --git a/dev-python/pyfits/files/pyfits-3.2-unbundle-cfitsio.patch b/dev-python/pyfits/files/pyfits-3.2-unbundle-cfitsio.patch
new file mode 100644
index 000000000000..28d149824903
--- /dev/null
+++ b/dev-python/pyfits/files/pyfits-3.2-unbundle-cfitsio.patch
@@ -0,0 +1,97 @@
+--- pyfits-3.2.orig/setup.cfg	2014-02-05 14:11:01.244895447 -0800
++++ pyfits-3.2/setup.cfg	2014-02-05 14:28:44.175030178 -0800
+@@ -36,91 +36,12 @@
+ 
+ [extension=pyfits.compression]
+ sources = 
+-	cextern/cfitsio/adler32.c
+-	cextern/cfitsio/buffers.c
+-	cextern/cfitsio/cfileio.c
+-	cextern/cfitsio/checksum.c
+-	cextern/cfitsio/crc32.c
+-	cextern/cfitsio/deflate.c
+-	cextern/cfitsio/drvrfile.c
+-	cextern/cfitsio/drvrgsiftp.c
+-	cextern/cfitsio/drvrmem.c
+-	cextern/cfitsio/drvrnet.c
+-	cextern/cfitsio/drvrsmem.c
+-	cextern/cfitsio/editcol.c
+-	cextern/cfitsio/edithdu.c
+-	cextern/cfitsio/eval_f.c
+-	cextern/cfitsio/eval_l.c
+-	cextern/cfitsio/eval_y.c
+-	cextern/cfitsio/fitscore.c
+-	cextern/cfitsio/fits_hcompress.c
+-	cextern/cfitsio/fits_hdecompress.c
+-	cextern/cfitsio/getcolb.c
+-	cextern/cfitsio/getcol.c
+-	cextern/cfitsio/getcold.c
+-	cextern/cfitsio/getcole.c
+-	cextern/cfitsio/getcoli.c
+-	cextern/cfitsio/getcolj.c
+-	cextern/cfitsio/getcolk.c
+-	cextern/cfitsio/getcoll.c
+-	cextern/cfitsio/getcolsb.c
+-	cextern/cfitsio/getcols.c
+-	cextern/cfitsio/getcolui.c
+-	cextern/cfitsio/getcoluj.c
+-	cextern/cfitsio/getcoluk.c
+-	cextern/cfitsio/getkey.c
+-	cextern/cfitsio/group.c
+-	cextern/cfitsio/grparser.c
+-	cextern/cfitsio/histo.c
+-	cextern/cfitsio/imcompress.c
+-	cextern/cfitsio/infback.c
+-	cextern/cfitsio/inffast.c
+-	cextern/cfitsio/inflate.c
+-	cextern/cfitsio/inftrees.c
+-	cextern/cfitsio/iraffits.c
+-	cextern/cfitsio/modkey.c
+-	cextern/cfitsio/pliocomp.c
+-	cextern/cfitsio/putcolb.c
+-	cextern/cfitsio/putcol.c
+-	cextern/cfitsio/putcold.c
+-	cextern/cfitsio/putcole.c
+-	cextern/cfitsio/putcoli.c
+-	cextern/cfitsio/putcolj.c
+-	cextern/cfitsio/putcolk.c
+-	cextern/cfitsio/putcoll.c
+-	cextern/cfitsio/putcolsb.c
+-	cextern/cfitsio/putcols.c
+-	cextern/cfitsio/putcolu.c
+-	cextern/cfitsio/putcolui.c
+-	cextern/cfitsio/putcoluj.c
+-	cextern/cfitsio/putcoluk.c
+-	cextern/cfitsio/putkey.c
+-	cextern/cfitsio/quantize.c
+-	cextern/cfitsio/region.c
+-	cextern/cfitsio/ricecomp.c
+-	cextern/cfitsio/scalnull.c
+-	cextern/cfitsio/swapproc.c
+-	cextern/cfitsio/trees.c
+-	cextern/cfitsio/uncompr.c
+-	cextern/cfitsio/wcssub.c
+-	cextern/cfitsio/wcsutil.c
+-	cextern/cfitsio/zcompress.c
+-	cextern/cfitsio/zuncompress.c
+-	cextern/cfitsio/zutil.c
+ 	src/compressionmodule.c
+ include_dirs = 
+ 	numpy
+-	cextern/cfitsio
+-extra_compile_args = 
+-	-Wno-unused-variable
+-	-Wno-parentheses
+-	-Wno-uninitialized
+-	-Wno-format
+-	-Wno-strict-prototypes
+-	-Wno-unused
+-	-Wno-comments
+-	-Wno-switch
+-optional = True
++libraries =
++	cfitsio
++optional = False
+ fail_message = 
+ 	!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ 	Failed to build PyFITS tile compression support.  PyFITS will still
diff --git a/dev-python/pyfits/files/pyfits-3.2.1-unbundle-cfitsio.patch b/dev-python/pyfits/files/pyfits-3.2.1-unbundle-cfitsio.patch
new file mode 100644
index 000000000000..a5d7e6217486
--- /dev/null
+++ b/dev-python/pyfits/files/pyfits-3.2.1-unbundle-cfitsio.patch
@@ -0,0 +1,98 @@
+--- setup.cfg.orig	2014-03-10 10:50:38.200531959 -0700
++++ setup.cfg	2014-03-10 10:52:19.288232002 -0700
+@@ -36,92 +36,12 @@
+ 
+ [extension=pyfits.compression]
+ sources = 
+-	cextern/cfitsio/adler32.c
+-	cextern/cfitsio/buffers.c
+-	cextern/cfitsio/cfileio.c
+-	cextern/cfitsio/checksum.c
+-	cextern/cfitsio/crc32.c
+-	cextern/cfitsio/deflate.c
+-	cextern/cfitsio/drvrfile.c
+-	cextern/cfitsio/drvrgsiftp.c
+-	cextern/cfitsio/drvrmem.c
+-	cextern/cfitsio/drvrnet.c
+-	cextern/cfitsio/drvrsmem.c
+-	cextern/cfitsio/editcol.c
+-	cextern/cfitsio/edithdu.c
+-	cextern/cfitsio/eval_f.c
+-	cextern/cfitsio/eval_l.c
+-	cextern/cfitsio/eval_y.c
+-	cextern/cfitsio/fitscore.c
+-	cextern/cfitsio/fits_hcompress.c
+-	cextern/cfitsio/fits_hdecompress.c
+-	cextern/cfitsio/getcolb.c
+-	cextern/cfitsio/getcol.c
+-	cextern/cfitsio/getcold.c
+-	cextern/cfitsio/getcole.c
+-	cextern/cfitsio/getcoli.c
+-	cextern/cfitsio/getcolj.c
+-	cextern/cfitsio/getcolk.c
+-	cextern/cfitsio/getcoll.c
+-	cextern/cfitsio/getcolsb.c
+-	cextern/cfitsio/getcols.c
+-	cextern/cfitsio/getcolui.c
+-	cextern/cfitsio/getcoluj.c
+-	cextern/cfitsio/getcoluk.c
+-	cextern/cfitsio/getkey.c
+-	cextern/cfitsio/group.c
+-	cextern/cfitsio/grparser.c
+-	cextern/cfitsio/histo.c
+-	cextern/cfitsio/imcompress.c
+-	cextern/cfitsio/infback.c
+-	cextern/cfitsio/inffast.c
+-	cextern/cfitsio/inflate.c
+-	cextern/cfitsio/inftrees.c
+-	cextern/cfitsio/iraffits.c
+-	cextern/cfitsio/modkey.c
+-	cextern/cfitsio/pliocomp.c
+-	cextern/cfitsio/putcolb.c
+-	cextern/cfitsio/putcol.c
+-	cextern/cfitsio/putcold.c
+-	cextern/cfitsio/putcole.c
+-	cextern/cfitsio/putcoli.c
+-	cextern/cfitsio/putcolj.c
+-	cextern/cfitsio/putcolk.c
+-	cextern/cfitsio/putcoll.c
+-	cextern/cfitsio/putcolsb.c
+-	cextern/cfitsio/putcols.c
+-	cextern/cfitsio/putcolu.c
+-	cextern/cfitsio/putcolui.c
+-	cextern/cfitsio/putcoluj.c
+-	cextern/cfitsio/putcoluk.c
+-	cextern/cfitsio/putkey.c
+-	cextern/cfitsio/quantize.c
+-	cextern/cfitsio/region.c
+-	cextern/cfitsio/ricecomp.c
+-	cextern/cfitsio/scalnull.c
+-	cextern/cfitsio/swapproc.c
+-	cextern/cfitsio/trees.c
+-	cextern/cfitsio/uncompr.c
+-	cextern/cfitsio/wcssub.c
+-	cextern/cfitsio/wcsutil.c
+-	cextern/cfitsio/zcompress.c
+-	cextern/cfitsio/zuncompress.c
+-	cextern/cfitsio/zutil.c
+ 	src/compressionmodule.c
+ include_dirs = 
+ 	numpy
+-	cextern/cfitsio
+-extra_compile_args = 
+-	-Wno-declaration-after-statement
+-	-Wno-unused-variable
+-	-Wno-parentheses
+-	-Wno-uninitialized
+-	-Wno-format
+-	-Wno-strict-prototypes
+-	-Wno-unused
+-	-Wno-comments
+-	-Wno-switch
+-optional = True
++libraries =
++	cfitsio
++optional = False
+ fail_message = 
+ 	!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ 	Failed to build PyFITS tile compression support.  PyFITS will still
diff --git a/dev-python/pyfits/metadata.xml b/dev-python/pyfits/metadata.xml
new file mode 100644
index 000000000000..f413ce9b6b03
--- /dev/null
+++ b/dev-python/pyfits/metadata.xml
@@ -0,0 +1,14 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-astronomy</herd>
+<herd>python</herd>
+<longdescription lang="en">
+  PyFITS provides an interface to FITS formatted files under the
+  Python scripting language and PyRAF, the Python-based interface to
+  IRAF.
+</longdescription>
+<upstream>
+  <remote-id type="pypi">pyfits</remote-id>
+</upstream>
+</pkgmetadata>
diff --git a/dev-python/pyfits/pyfits-2.4.0.ebuild b/dev-python/pyfits/pyfits-2.4.0.ebuild
new file mode 100644
index 000000000000..93014a9d736e
--- /dev/null
+++ b/dev-python/pyfits/pyfits-2.4.0.ebuild
@@ -0,0 +1,43 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="2"
+SUPPORT_PYTHON_ABIS="1"
+RESTRICT_PYTHON_ABIS="3.* 2.7-pypy-*"
+
+inherit distutils
+
+DESCRIPTION="Provides an interface to FITS formatted files under python"
+SRC_URI="http://www.stsci.edu/resources/software_hardware/${PN}/${P}.tar.gz"
+HOMEPAGE="http://www.stsci.edu/resources/software_hardware/pyfits"
+
+IUSE=""
+SLOT="0"
+KEYWORDS="amd64 x86 ~x86-fbsd"
+LICENSE="BSD"
+
+RDEPEND="dev-python/numpy
+	!<dev-python/astropy-0.3"
+DEPEND="${RDEPEND}"
+
+# current tests need data which are not in tar ball
+RESTRICT="test"
+
+src_test() {
+	testing() {
+		local t
+		for t in lib/tests/testPyfits*.py; do
+			PYTHONPATH="$(ls -d build-${PYTHON_ABI}/lib*)"  "$(PYTHON)" "${t}" || die "${t} failed with Python ${PYTHON_ABI}"
+		done
+	}
+	python_execute_function testing
+}
+
+src_install() {
+	distutils_src_install
+	local binary
+	for binary in "${ED}"/usr/bin/*; do
+		mv ${binary}{,-pyfits} || die
+	done
+}
diff --git a/dev-python/pyfits/pyfits-3.3.ebuild b/dev-python/pyfits/pyfits-3.3.ebuild
new file mode 100644
index 000000000000..5d014f3a894a
--- /dev/null
+++ b/dev-python/pyfits/pyfits-3.3.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python{2_7,3_3,3_4} )
+inherit distutils-r1 eutils multilib
+
+DESCRIPTION="Provides an interface to FITS formatted files under python"
+HOMEPAGE="http://www.stsci.edu/resources/software_hardware/pyfits"
+SRC_URI="mirror://pypi/p/${PN}/${P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="amd64 x86 ~x86-fbsd ~amd64-linux ~x86-linux"
+IUSE="doc test"
+
+RDEPEND="
+	dev-python/numpy[${PYTHON_USEDEP}]
+	!<dev-python/astropy-0.3
+	sci-libs/cfitsio:0="
+DEPEND="${RDEPEND}
+	dev-python/setuptools[${PYTHON_USEDEP}]
+	>=dev-python/d2to1-0.2.5[${PYTHON_USEDEP}]
+	>=dev-python/stsci-distutils-0.3[${PYTHON_USEDEP}]
+	doc? (
+		dev-python/matplotlib[${PYTHON_USEDEP}]
+		$(python_gen_cond_dep 'dev-python/numpydoc[${PYTHON_USEDEP}]' python2_7 'python{3_3,3_4}')
+		dev-python/sphinxcontrib-programoutput[${PYTHON_USEDEP}]
+		dev-python/stsci-sphinxext[${PYTHON_USEDEP}]
+		 )
+	test? ( dev-python/nose[${PYTHON_USEDEP}] )"
+
+PATCHES=( "${FILESDIR}"/${PN}-3.2.1-unbundle-cfitsio.patch )
+
+python_prepare_all() {
+	sed -i \
+		-e "s/\(hook_package_dir = \)lib/\1$(get_libdir)/g" \
+		"${S}"/setup.cfg || die
+
+	# https://github.com/spacetelescope/PyFITS/issues/95
+	sed -e "s/except UserWarning, w/except UserWarning as w/" -i lib/pyfits/scripts/fitscheck.py
+
+	distutils-r1_python_prepare_all
+}
+
+python_compile_all() {
+	use doc && emake -C docs html
+}
+
+python_test() {
+	cd "${BUILD_DIR}"/lib* || die
+	nosetests || die
+}
+
+python_install_all() {
+	use doc && local HTML_DOCS=( docs/build/html )
+	distutils-r1_python_install_all
+	dodoc FAQ.txt CHANGES.txt
+	rename_binary() {
+		local binary
+		for binary in "${ED}"/usr/bin/* "${D}$(python_get_scriptdir)"/*
+		do
+			mv ${binary}{,-${PN}} || die "failed renaming"
+		done
+	}
+	python_foreach_impl rename_binary
+}