proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

1 files changed, 39 insertions, 0 deletions

diff --git a/licenses/tm-align b/licenses/tm-align
new file mode 100644
index 000000000000..9c86a443f259
--- /dev/null
+++ b/licenses/tm-align
@@ -0,0 +1,39 @@
+TMalign.f:
+
+This program is to identify the best alignment of two protein
+structures that gives the highest TM-score. Input structures must
+be in the PDB format. By default, TM-score is normalized by the
+second protein. Users can obtain a brief instruction by simply
+running the program without arguments. For comments/suggestions,
+please contact email: zhng@umich.edu.
+
+Reference to cite:
+Yang Zhang, Jeffrey Skolnick, Nucl. Acid Res. 2005 33: 2303-9
+
+Permission to use, copy, modify, and distribute this program for
+any purpose, with or without fee, is hereby granted, provided that
+the notices on the head, the reference information, and this
+copyright notice appear in all copies or substantial portions of
+the Software. It is provided "as is" without express or implied
+warranty.
+
+---
+
+TMscore.f:
+
+This program is to compare two protein structures and identify the
+best superposition that has the highest TM-score. Input structures
+must be in the PDB format. By default, TM-score is normalized by
+the second protein. Users can obtain a brief instruction by simply
+running the program without arguments. For comments/suggestions,
+please contact email: zhng@umich.edu.
+
+Reference:
+Yang Zhang, Jeffrey Skolnick, Proteins, 2004 57:702-10.
+
+Permission to use, copy, modify, and distribute this program for
+any purpose, with or without fee, is hereby granted, provided that
+the notices on the head, the reference information, and this
+copyright notice appear in all copies or substantial portions of
+the Software. It is provided "as is" without express or implied
+warranty.