proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

1 files changed, 72 insertions, 0 deletions

diff --git a/sci-biology/GBrowse/files/GBrowseInstall.pm-2.39.patch b/sci-biology/GBrowse/files/GBrowseInstall.pm-2.39.patch
new file mode 100644
index 000000000000..5aa0be9df918
--- /dev/null
+++ b/sci-biology/GBrowse/files/GBrowseInstall.pm-2.39.patch
@@ -0,0 +1,72 @@
+diff -durr GBrowse-2.39-orig/install_util/GBrowseInstall.pm GBrowse-2.39/install_util/GBrowseInstall.pm
+--- GBrowse-2.39-orig/install_util/GBrowseInstall.pm	2011-07-19 20:14:52.434608020 +0000
++++ GBrowse-2.39/install_util/GBrowseInstall.pm	2011-07-19 21:02:13.685107753 +0000
+@@ -454,33 +454,33 @@
+     $gid =~ /^(\d+)$/;
+     $gid = $1;
+     
+-    unless (chown $uid,$gid,$tmp) {
+-	$self->ownership_warning($tmp,$user);
+-    }
++#    unless (chown $uid,$gid,$tmp) {
++#	$self->ownership_warning($tmp,$user);
++#    }
+ 
+     my $htdocs_i = File::Spec->catfile($self->install_path->{htdocs},'i');
+     my $images   = File::Spec->catfile($tmp,'images');
+     my $htdocs = $self->install_path->{htdocs};
+-    chown $uid,-1,$htdocs;
++#    chown $uid,-1,$htdocs;
+     {
+ 	local $> = $uid;
+-	symlink($images,$htdocs_i);  # so symlinkifowner match works!
++#	symlink($images,$htdocs_i);  # so symlinkifowner match works!
+     }
+-    chown $>,-1,$self->install_path->{htdocs};
++#    chown $>,-1,$self->install_path->{htdocs};
+ 
+     my $persistent = $self->install_path->{'persistent'};
+     my $sessions   = File::Spec->catfile($persistent,'sessions');
+     my $userdata   = File::Spec->catfile($persistent,'userdata');
+-    mkpath([$sessions,$userdata],0711);
++#    mkpath([$sessions,$userdata],0711);
+ 
+     my $databases = $self->install_path->{'databases'};
+     
+-    unless (chown $uid,$gid,glob(File::Spec->catfile($databases,'').'*')) {
+-	$self->ownership_warning($databases,$user);
+-    }
++#    unless (chown $uid,$gid,glob(File::Spec->catfile($databases,'').'*')) {
++#	$self->ownership_warning($databases,$user);
++#    }
+ 
+-    chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave');
+-    $self->fix_selinux;
++    # chmod 0755,File::Spec->catfile($self->install_path->{'etc'},'init.d','gbrowse-slave');
++    # $self->fix_selinux;
+ 
+     my $base = basename($self->install_path->{htdocs});
+ 
+@@ -489,14 +489,14 @@
+     my $metadb_script = File::Spec->catfile("bin", "gbrowse_metadb_config.pl");
+     my $perl          = $self->perl;
+     my @inc           = map{"-I$_"} split ':',$self->added_to_INC;
+-    system $perl,@inc,$metadb_script;
+-    system 'sudo','chown','-R',"$uid.$gid",$sessions,$userdata;
++#    system $perl,@inc,$metadb_script;
++#    system 'sudo','chown','-R',"$uid.$gid",$sessions,$userdata;
+ 
+-    if (Module::Build->y_n(
+-	    "It is recommended that you restart Apache. Shall I try this for you?",'y'
+-	)) {
+-	system "sudo /etc/init.d/apache2 restart";
+-    }
++#    if (Module::Build->y_n(
++#	    "It is recommended that you restart Apache. Shall I try this for you?",'y'
++#	)) {
++#	system "sudo /etc/init.d/apache2 restart";
++#    }
+     
+     print STDERR "\n***INSTALLATION COMPLETE***\n";
+     print STDERR "Load http://localhost/$base for demo and documentation.\n";
+Only in GBrowse-2.39/install_util: GBrowseInstall.pm~