sci-biology/bamtools: Unbundle dev-libs/jsoncpp

Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=568090

Package-Manager: portage-2.2.26
Signed-off-by: Justin Lecher <jlec@gentoo.org>

1 files changed, 48 insertions, 0 deletions

diff --git a/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
new file mode 100644
index 000000000000..dc1b60ba432e
--- /dev/null
+++ b/sci-biology/bamtools/bamtools-1.0.2-r1.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+inherit cmake-utils
+
+DESCRIPTION="A programmer's API and an end-user's toolkit for handling BAM files"
+HOMEPAGE="https://github.com/pezmaster31/bamtools"
+SRC_URI="mirror://github/pezmaster31/bamtools/"${P}".tar.gz"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+	dev-libs/jsoncpp
+	sys-libs/zlib"
+DEPEND="${RDEPEND}"
+
+src_prepare() {
+	sed \
+		-e '/third_party/d' \
+		-i src/CMakeLists.txt || die
+	rm -r src/third_party || die
+
+	sed \
+		-e 's:json.h:json/json.h:g' \
+		-i src/toolkit/bamtools_filter.cpp || die
+
+	cmake-utils_src_prepare
+}
+
+src_install() {
+	local i
+	for i in bin/bamtools-${PV} lib/libbamtools.so.${PV} lib/libbamtools-utils.so.${PV}; do
+		TMPDIR="$(pwd)" scanelf -Xr $i || die
+	done
+
+	dobin bin/bamtools
+	dolib.so lib/*so*
+	use static-libs && dolib.a lib/*a
+	insinto /usr/include/bamtools
+	doins include/api include/shared
+	dodoc README
+}