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| author |   David Seifert <soap@gentoo.org> | 2017-09-02 13:07:41 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2017-09-02 14:36:56 +0200 |
| commit | 59716472229d52eacd4bba26ac2d90a9b3f44233 (patch) | |
| tree | 6102a1600a05d57b242a8fcd5bee38383bd479f7 /sci-biology/bwa/files | |
| parent | sci-biology/bcftools: Add 1.5 from sci overlay (diff) | |
| download | gentoo-59716472229d52eacd4bba26ac2d90a9b3f44233.tar.gz gentoo-59716472229d52eacd4bba26ac2d90a9b3f44233.tar.bz2 gentoo-59716472229d52eacd4bba26ac2d90a9b3f44233.zip | |
sci-biology/bwa: Remove old
Package-Manager: Portage-2.3.8, Repoman-2.3.3
Closes: https://github.com/gentoo/gentoo/pull/5593
Diffstat (limited to 'sci-biology/bwa/files')
| -rw-r--r-- | sci-biology/bwa/files/bwa-0.7.12-Makefile.patch | 27 |
1 files changed, 0 insertions, 27 deletions
diff --git a/sci-biology/bwa/files/bwa-0.7.12-Makefile.patch b/sci-biology/bwa/files/bwa-0.7.12-Makefile.patch deleted file mode 100644 index 406e9b052376..000000000000 --- a/sci-biology/bwa/files/bwa-0.7.12-Makefile.patch +++ /dev/null @@ -1,27 +0,0 @@ ---- Makefile -+++ Makefile -@@ -1,8 +1,8 @@ --CC= gcc -+CC?= gcc - #CC= clang --analyze --CFLAGS= -g -Wall -Wno-unused-function -O2 -+CFLAGS?= -g -Wall -Wno-unused-function -O2 - WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS --AR= ar -+AR?= ar - DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) - LOBJS= utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o - AOBJS= QSufSort.o bwt_gen.o bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \ -@@ -26,10 +26,10 @@ - all:$(PROG) - - bwa:libbwa.a $(AOBJS) main.o -- $(CC) $(CFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) -+ $(CC) $(CFLAGS) $(LDFLAGS) $(DFLAGS) $(AOBJS) main.o -o $@ -L. -lbwa $(LIBS) - - bwamem-lite:libbwa.a example.o -- $(CC) $(CFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) -+ $(CC) $(CFLAGS) $(LDFLAGS) $(DFLAGS) example.o -o $@ -L. -lbwa $(LIBS) - - libbwa.a:$(LOBJS) - $(AR) -csru $@ $(LOBJS) |