sci-biology/cd-hit: Version bump to 4.6.6

Package-Manager: Portage-2.3.3, Repoman-2.3.1

1 files changed, 48 insertions, 0 deletions

diff --git a/sci-biology/cd-hit/cd-hit-4.6.6.ebuild b/sci-biology/cd-hit/cd-hit-4.6.6.ebuild
new file mode 100644
index 000000000000..49bea9689980
--- /dev/null
+++ b/sci-biology/cd-hit/cd-hit-4.6.6.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2017 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit flag-o-matic toolchain-funcs
+
+RELDATE="2016-0711"
+RELEASE="${PN}-v${PV}-${RELDATE}"
+
+DESCRIPTION="Clustering Database at High Identity with Tolerance"
+HOMEPAGE="http://weizhong-lab.ucsd.edu/cd-hit/"
+SRC_URI="https://github.com/weizhongli/cdhit/releases/download/V${PV}/${RELEASE}.tar.gz -> ${P}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="openmp"
+
+RDEPEND="dev-lang/perl"
+
+S="${WORKDIR}"/${RELEASE}
+
+PATCHES=(
+	"${FILESDIR}"/${PN}-4.6.6-fix-perl-shebangs.patch
+	"${FILESDIR}"/${PN}-4.6.6-fix-build-system.patch
+)
+
+pkg_pretend() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+pkg_setup() {
+	[[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp
+}
+
+src_compile() {
+	tc-export CXX
+	emake openmp=$(usex openmp)
+}
+
+src_install() {
+	dodir /usr/bin
+	PREFIX="${EPREFIX}"/usr/bin default
+
+	dodoc doc/*.pdf
+}