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| author |   Jakov Smolić <jsmolic@gentoo.org> | 2022-02-10 10:16:56 +0100 |
|---|---|---|
| committer | Jakov Smolić <jsmolic@gentoo.org> | 2022-02-10 10:17:35 +0100 |
| commit | c00ae3c8eaa7a79e7b376d45f8868d757c98d310 (patch) | |
| tree | 75213a0428eb4c93f6b3afdcabb33724ecd5f18f /sci-biology | |
| parent | sci-biology/repeatmasker-libraries: treeclean (diff) | |
| download | gentoo-c00ae3c8eaa7a79e7b376d45f8868d757c98d310.tar.gz gentoo-c00ae3c8eaa7a79e7b376d45f8868d757c98d310.tar.bz2 gentoo-c00ae3c8eaa7a79e7b376d45f8868d757c98d310.zip | |
sci-biology/repeatmasker: treeclean
Closes: https://bugs.gentoo.org/828701
Signed-off-by: Jakov Smolić <jsmolic@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/repeatmasker/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/repeatmasker/metadata.xml | 8 | ||||
| -rw-r--r-- | sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild | 58 |
3 files changed, 0 insertions, 67 deletions
diff --git a/sci-biology/repeatmasker/Manifest b/sci-biology/repeatmasker/Manifest deleted file mode 100644 index afba36fe4e6d..000000000000 --- a/sci-biology/repeatmasker/Manifest +++ /dev/null @@ -1 +0,0 @@ -DIST RepeatMasker-open-4-0-1.tar.gz 84077910 BLAKE2B 45598d46ef1c0e1233ed5ce10c2d29e4b2ef1a6843846970df2d0f997a22657eeed7dd7c851418d6f751468b22327b47f3b72105fdcfa56bbebe97395946ab37 SHA512 6b710a02b2964bca6acb25cc918bd56f7caba7b80b3b683972f0584180bf0fd3704f657d7ee341187a4ac86d9883e62eb4f09da237fa8ef1b481137d1a89963e diff --git a/sci-biology/repeatmasker/metadata.xml b/sci-biology/repeatmasker/metadata.xml deleted file mode 100644 index ccdff086e20b..000000000000 --- a/sci-biology/repeatmasker/metadata.xml +++ /dev/null @@ -1,8 +0,0 @@ -<?xml version="1.0" encoding="UTF-8"?> -<!DOCTYPE pkgmetadata SYSTEM "https://www.gentoo.org/dtd/metadata.dtd"> -<pkgmetadata> - <maintainer type="project"> - <email>sci-biology@gentoo.org</email> - <name>Gentoo Biology Project</name> - </maintainer> -</pkgmetadata> diff --git a/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild b/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild deleted file mode 100644 index bf6097df1f68..000000000000 --- a/sci-biology/repeatmasker/repeatmasker-4.0.1.ebuild +++ /dev/null @@ -1,58 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -MY_PV=${PV//\./-} - -DESCRIPTION="Screen DNA sequences for interspersed repeats and low complexity DNA" -HOMEPAGE="http://repeatmasker.org/" -SRC_URI="http://www.repeatmasker.org/RepeatMasker-open-${MY_PV}.tar.gz" - -LICENSE="OSL-2.1" -SLOT="0" -KEYWORDS="~amd64 ~x86" -IUSE="" - -DEPEND="" -RDEPEND=" - sci-biology/rmblast - sci-biology/trf - sci-biology/repeatmasker-libraries" - -S="${WORKDIR}/RepeatMasker" - -src_configure() { - sed -i -e 's/system( "clear" );//' \ - -e 's|> \($rmLocation/Libraries/RepeatMasker.lib\)|> '${D}'/\1|' "${S}/configure" || die - echo " -env -/usr/share/${PN} -/usr/bin -2 -/opt/rmblast/bin -Y -5" | "${S}/configure" || die "configure failed" - sed -i -e 's|use lib $FindBin::RealBin;|use lib "/usr/share/'${PN}'/lib";|' \ - -e 's|".*\(taxonomy.dat\)"|"/usr/share/'${PN}'/\1"|' \ - -e '/$REPEATMASKER_DIR/ s|$FindBin::RealBin|/usr/share/'${PN}'|' \ - "${S}"/{DateRepeats,ProcessRepeats,RepeatMasker,DupMasker,RepeatProteinMask,RepeatMaskerConfig.pm,Taxonomy.pm} || die -} - -src_install() { - exeinto /usr/share/${PN} - for i in DateRepeats ProcessRepeats RepeatMasker DupMasker RepeatProteinMask; do - doexe $i - dosym /usr/share/${PN}/$i /usr/bin/$i - done - - dodir /usr/share/${PN}/lib - insinto /usr/share/${PN}/lib - doins "${S}"/*.pm - - insinto /usr/share/${PN} - doins -r util Matrices Libraries taxonomy.dat *.help - keepdir /usr/share/${PN}/Libraries - - dodoc README INSTALL *.help -} |