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| author |   David Seifert <soap@gentoo.org> | 2021-04-05 16:14:38 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2021-04-05 16:14:38 +0200 |
| commit | d3bc203ff48c69ad14e9b659c8d9c3c9d6d85bff (patch) | |
| tree | 1ad65965ad0eeba47f8e1fa1339228d5ef34c82e /sci-biology | |
| parent | sci-biology/sibsim4: Port to EAPI 7 (diff) | |
| download | gentoo-d3bc203ff48c69ad14e9b659c8d9c3c9d6d85bff.tar.gz gentoo-d3bc203ff48c69ad14e9b659c8d9c3c9d6d85bff.tar.bz2 gentoo-d3bc203ff48c69ad14e9b659c8d9c3c9d6d85bff.zip | |
sci-biology/raxml: Port to EAPI 7
Package-Manager: Portage-3.0.18, Repoman-3.0.3
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/raxml/files/raxml-7.2.6-makefile.patch | 4 | ||||
| -rw-r--r-- | sci-biology/raxml/raxml-7.2.6.ebuild | 25 |
2 files changed, 12 insertions, 17 deletions
diff --git a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch b/sci-biology/raxml/files/raxml-7.2.6-makefile.patch index ae83e2eef4e7..6b82ed65b770 100644 --- a/sci-biology/raxml/files/raxml-7.2.6-makefile.patch +++ b/sci-biology/raxml/files/raxml-7.2.6-makefile.patch @@ -14,7 +14,7 @@ index 716b6c6..f0c1de2 100644 -CFLAGS = -D_GNU_SOURCE -fomit-frame-pointer -funroll-loops -O2 -msse -+CFLAGS += -D_GNU_SOURCE ++CPPFLAGS += -D_GNU_SOURCE @@ -23,7 +23,7 @@ index 716b6c6..f0c1de2 100644 raxmlHPC : $(objs) - $(CC) -o raxmlHPC $(objs) $(LIBRARIES) -+ $(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES) ++ $(CC) $(LDFLAGS) -o raxmlHPC $(objs) $(LIBRARIES) $(LIBS) classify.o : classify.c $(GLOBAL_DEPS) evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS) diff --git a/sci-biology/raxml/raxml-7.2.6.ebuild b/sci-biology/raxml/raxml-7.2.6.ebuild index 50fffc34accb..adb044426381 100644 --- a/sci-biology/raxml/raxml-7.2.6.ebuild +++ b/sci-biology/raxml/raxml-7.2.6.ebuild @@ -1,34 +1,29 @@ -# Copyright 1999-2015 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 -inherit eutils flag-o-matic toolchain-funcs +inherit flag-o-matic toolchain-funcs DESCRIPTION="Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees" HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html" SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2" +S="${WORKDIR}/RAxML-${PV}" -SLOT="0" LICENSE="GPL-2" +SLOT="0" KEYWORDS="~amd64 ~x86" IUSE="cpu_flags_x86_sse3 +threads" - REQUIRED_USE="cpu_flags_x86_sse3" # mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS -DEPEND="" # mpi? ( virtual/mpi )" -RDEPEND="${DEPEND}" - -S="${WORKDIR}/RAxML-${PV}" - -src_prepare() { - epatch "${FILESDIR}"/${P}-makefile.patch +PATCHES=( "${FILESDIR}"/${P}-makefile.patch ) - use cpu_flags_x86_sse3 && append-cflags -D__SIM_SSE3 +src_configure() { + use cpu_flags_x86_sse3 && append-cppflags -D__SIM_SSE3 use threads && \ - append-cflags -D_USE_PTHREADS && \ - append-ldflags -pthread + append-cppflags -D_USE_PTHREADS && \ + append-libs -pthread tc-export CC } |