Drop "CCP4: Software for Macromolecular Crystallography"

obsoletes:
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=160190
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=324059
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=332485
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367771
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=367773
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=383227
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=448756
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460502
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=460504
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=466936
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467040
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=467048
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=476580
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478580
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478586
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478588
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478594
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=478604
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=521646
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=528512
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=530878
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=540760
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=555614
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=556498
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=557038
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=561196
Gentoo-Bug: https://bugs.gentoo.org/show_bug.cgi?id=562780

Signed-off-by: Justin Lecher <jlec@gentoo.org>

4 files changed, 0 insertions, 138 deletions

diff --git a/sci-chemistry/phaser/Manifest b/sci-chemistry/phaser/Manifest
deleted file mode 100644
index deb3ba972a75..000000000000
--- a/sci-chemistry/phaser/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST ccp4-6.1.13-phaser-cctbx-src.tar.gz 22021353 SHA256 e6c4365cb34da5ce2dd5f1e74b8927258064016194446163418c8a3139a4b804 SHA512 cdf36572613a6e400af0f29da501ccfd2a9f1a7e2d89162aad3fe14929816b41790bb57ba1e77976b9046c6e06a29df2748999db93a2cd0a4d1fde95ac1f9e8b WHIRLPOOL 5aa1a1c6520be90ef02be0e9de9c111a9835cda05a3549c390f62ceef7e68c8392670d91941b823c0ee94f29e6aab9d34a61b90e8bd3d4820a83daa547463fdb
diff --git a/sci-chemistry/phaser/files/phaser-2.1.4-chmod.patch b/sci-chemistry/phaser/files/phaser-2.1.4-chmod.patch
deleted file mode 100644
index 5311cb332785..000000000000
--- a/sci-chemistry/phaser/files/phaser-2.1.4-chmod.patch
+++ /dev/null
@@ -1,13 +0,0 @@
-diff --git a/lib/cctbx/cctbx_sources/libtbx/libtbx/config.py b/lib/cctbx/cctbx_sources/libtbx/libtbx/config.py
-index 3b1bd3a..8939a74 100755
---- a/lib/cctbx/cctbx_sources/libtbx/libtbx/config.py
-+++ b/lib/cctbx/cctbx_sources/libtbx/libtbx/config.py
-@@ -802,8 +802,6 @@ class environment:
-     else:
-       action = self.write_bin_sh_dispatcher
-       ext = ""
--      try: os.chmod(source_file, 0755)
--      except OSError: pass
-     target_file_ext = target_file + ext
-     remove_or_rename(target_file_ext)
-     try: action(source_file, target_file_ext)
diff --git a/sci-chemistry/phaser/metadata.xml b/sci-chemistry/phaser/metadata.xml
deleted file mode 100644
index 6b4826474daa..000000000000
--- a/sci-chemistry/phaser/metadata.xml
+++ /dev/null
@@ -1,9 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <herd>sci-chemistry</herd>
-  <maintainer>
-    <email>jlec@gentoo.org</email>
-    <description>ccp4 maintainer</description>
-  </maintainer>
-</pkgmetadata>
diff --git a/sci-chemistry/phaser/phaser-2.1.4.ebuild b/sci-chemistry/phaser/phaser-2.1.4.ebuild
deleted file mode 100644
index 86fa57f52603..000000000000
--- a/sci-chemistry/phaser/phaser-2.1.4.ebuild
+++ /dev/null
@@ -1,115 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit eutils flag-o-matic python-single-r1 toolchain-funcs
-
-CCP4VER="6.1.13"
-
-DESCRIPTION="A program for phasing macromolecular crystal structures"
-HOMEPAGE="http://www-structmed.cimr.cam.ac.uk/phaser"
-SRC_URI="ftp://ftp.ccp4.ac.uk/ccp4/${CCP4VER}/ccp4-${CCP4VER}-${PN}-cctbx-src.tar.gz"
-
-LICENSE="|| ( phaser phaser-com ccp4 )"
-SLOT="0"
-#KEYWORDS="~amd64 ~x86"
-KEYWORDS=""
-IUSE="openmp"
-
-RDEPEND=""
-DEPEND="${RDEPEND}
-		  app-shells/tcsh"
-
-S="${WORKDIR}"/ccp4-${CCP4VER}
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/phaser-2.1.4-chmod.patch \
-		"${FILESDIR}"/phaser-2.1.4-ldflags.patch
-
-	use openmp && append-flags -fopenmp
-
-	for i in ${CXXFLAGS}; do
-		OPTS="${OPTS} \"${i}\","
-	done
-
-	OPTS=${OPTS%,}
-
-	sed -i \
-		-e "s:opts = \[.*\]$:opts = \[${OPTS}\]:g" \
-		"${S}"/lib/cctbx/cctbx_sources/libtbx/SConscript || die
-
-	for i in ${LDFLAGS}; do
-		OPTSLD="${OPTSLD} \"${i}\","
-	done
-
-	sed -i \
-		-e "s:env_etc.shlinkflags .* \"-shared\":env_etc.shlinkflags = \[ ${OPTSLD} \"-shared\"\]:g" \
-		-e "s:\[\"-static:\[${OPTSLD} \"-static:g" \
-		"${S}"/lib/cctbx/cctbx_sources/libtbx/SConscript || die
-
-}
-
-src_configure() {
-	local compiler
-	local mtype
-	local mversion
-	local nproc
-
-	# Valid compilers are win32_cl, sunos_CC, unix_gcc, unix_ecc,
-	# unix_icc, unix_icpc, tru64_cxx, hp_ux11_aCC, irix_CC,
-	# darwin_c++, darwin_gcc.  The build systems seems to prepend
-	# unix_ all by itself.  Can this be derived from $(tc-getCC)?
-	compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)')
-
-	# Breaks cross compilation.
-	mtype=$(src/${PN}/bin/machine_type)
-	mversion=$(src/${PN}/bin/machine_version)
-
-	einfo "Creating build directory"
-	mkdir build
-	cd build
-	ln -sf "${S}/lib/cctbx/cctbx_sources/scons"  scons
-	ln -sf "${S}/lib/cctbx/cctbx_sources/libtbx" libtbx
-
-	einfo "Configuring phaser components"
-	$(PYTHON) "libtbx/configure.py" \
-		--build=release \
-		--compiler=${compiler} \
-		--repository="${S}"/src/${PN}/source \
-		--repository="${S}"/lib/cctbx/cctbx_sources \
-		--static_libraries \
-		ccp4io="${S}" \
-		mmtbx \
-		phaser || die "configure.py failed"
-}
-
-src_compile() {
-	nproc=`echo "-j1 ${MAKEOPTS}" \
-		| sed -e "s/.*\(-j\s*\|--jobs=\)\([0-9]\+\).*/\2/"`
-
-	cd build
-	einfo "Setting up build environment"
-	source setpaths.sh
-
-	einfo "Compiling phaser components"
-	libtbx.scons -j ${nproc} || die "libtbx.scons failed"
-}
-
-src_install() {
-	dobin build/exe/phaser || die
-
-	cat >> "${T}"/53${PN} <<- EOF
-	PHASER="${EPREFIX}/usr/bin"
-	PHASER_ENVIRONMENT="1"
-	PHASER_MTYPE="${mtype}"
-	PHASER_MVERSION="${mversion}"
-	PHASER_VERSION="${PV}"
-	EOF
-
-	doenvd "${T}"/53${PN} || die
-}