proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

3 files changed, 65 insertions, 0 deletions

diff --git a/sci-chemistry/prodecomp/Manifest b/sci-chemistry/prodecomp/Manifest
new file mode 100644
index 000000000000..ffead0387fc2
--- /dev/null
+++ b/sci-chemistry/prodecomp/Manifest
@@ -0,0 +1 @@
+DIST prodecomp-3.0.tar.bz2 18377446 SHA256 097b97aa6503ff1aecd4147a6e3ef9997807773a7ef58aab8b10baf73b65e457 SHA512 8d23f174e125d4c7776432a37b063d2f39af8497050bd7f7ff358c67d509b1eef2c2865596efae632855fd583fb52c233b67d0e667c6c2a03ba6f5a2f2ac9b0d WHIRLPOOL c06f4bf32e3d5ff4f2b5f1b1c4fd03d7a5b734651707e6fc101ce0ea5ba17c9377edb60166c4e9313b616b37bd580febea01bf62a71e15389174b301c4d70738
diff --git a/sci-chemistry/prodecomp/metadata.xml b/sci-chemistry/prodecomp/metadata.xml
new file mode 100644
index 000000000000..a91e9092dc52
--- /dev/null
+++ b/sci-chemistry/prodecomp/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@gentoo.org</email>
+  </maintainer>
+  <longdescription>
+	PRODECOMP (PROjection DECOMPosition) is a software tool for 
+	decomposition of 2D projections of high-dimensional NMR spectra to a set
+	of components (defined in turn by one-dimensional "shapes"). 
+	Simultaneous analysis of projections from one or several 
+	high-dimensional experiments provide unambigous chemical shifts for 
+	large spin systems. The latter can be used for backbone and side-chain 
+	assignments as well as structural studies of proteins 
+	(Malmodin and Billeter 2005; 2006; Staykova et al. 2008a,b).
+</longdescription>
+</pkgmetadata>
diff --git a/sci-chemistry/prodecomp/prodecomp-3.0.ebuild b/sci-chemistry/prodecomp/prodecomp-3.0.ebuild
new file mode 100644
index 000000000000..28791c9108ba
--- /dev/null
+++ b/sci-chemistry/prodecomp/prodecomp-3.0.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 )
+PYTHON_REQ_USE="tk"
+
+inherit python-single-r1
+
+DESCRIPTION="Decomposition-based analysis of NMR projections"
+HOMEPAGE="http://www.lundberg.gu.se/nmr/software.php?program=PRODECOMP"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="examples"
+
+RDEPEND="sci-libs/scipy[${PYTHON_USEDEP}]"
+DEPEND=""
+
+S="${WORKDIR}"/NMRProjAnalys
+
+src_install() {
+	if use examples; then
+		insinto /usr/share/${PN}
+		doins -r ExampleData Results
+	fi
+
+	dodoc ProjTools/Manual.pdf
+	rm -rf ProjTools/Manual.pdf ProdecompOutput || die
+
+	python_moduleinto ${PN}
+	python_domodule ProjTools/.
+	python_optimize
+
+	cat >> "${T}"/${PN} <<- EOF
+	#!/bin/bash
+	${PYTHON} -O "${EPREFIX}"/$(python_get_sitedir)/${PN}/ProjAnalys.py $@
+	EOF
+	dobin "${T}"/${PN}
+
+	dosym ../../../../share/doc/${PF}/Manual.pdf $(python_get_sitedir)/${PN}/Manual.pdf
+}