sci-libs/avogadrolibs: Bump to 1.93.0

Closes: https://bugs.gentoo.org/652918
Package-Manager: Portage-2.3.93, Repoman-2.3.20
Signed-off-by: Pacho Ramos <pacho@gentoo.org>

3 files changed, 101 insertions, 0 deletions

diff --git a/sci-libs/avogadrolibs/Manifest b/sci-libs/avogadrolibs/Manifest
index 3eb86b3019a7..09c6bc5a759c 100644
--- a/sci-libs/avogadrolibs/Manifest
+++ b/sci-libs/avogadrolibs/Manifest
@@ -1,2 +1,3 @@
 DIST avogadrolibs-1.91.0_pre20180415.tar.gz 2541101 BLAKE2B 526d2135af123d31220c8dd87351a35464e3dfd6b8d411d6dc9a6b3e74693090adfa3b61198a6a296eac99e6bbd67623f7aeda6a1752a09e3e3bcaa3df4d5008 SHA512 1cc646368f70523fcf20c6cf598025234162e0c81da64a3b5375c1691a6743f2aceb1f13230937bf9da045e725a23c1c89c8121e07b31ef9e2c7987b1feafccc
+DIST avogadrolibs-1.93.0.tar.gz 2735862 BLAKE2B b5d696f23aeeab27358ee390a30b2cf146e7119185a0d2e8d71b34d2744e534cd8b50b36d12928b5aa723118db470272b6428514593d64770d172c4bde730cf6 SHA512 1af220e5614cbd96656679c2879cb7f7c46acd135b4e6f2e5f8d0ba98601ce004e78f019a0a71c643f005451309bd194eb73eb9f66707685e5855b47e95f7eae
 DIST linux64-genXrdPattern 7480152 BLAKE2B dca8285c41aadfaa20c72f337e0f02db8ee07ce30c11ae84bf3aa7bd0b2220273d33f484d63f761d41a8946c6a0b77a0fb27906c480bcae01ae49b1531ae5cbb SHA512 538bde12e1e52600a21640d5907f43fcc853c6f3c111880f39eb238093e3d1358ccdfa1f45e944ec8b8e5ee3c2dff269cefe5334db5d73300e6ca327c95520b8
diff --git a/sci-libs/avogadrolibs/avogadrolibs-1.93.0.ebuild b/sci-libs/avogadrolibs/avogadrolibs-1.93.0.ebuild
new file mode 100644
index 000000000000..a1cbede0ed28
--- /dev/null
+++ b/sci-libs/avogadrolibs/avogadrolibs-1.93.0.ebuild
@@ -0,0 +1,89 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+inherit cmake-utils flag-o-matic
+
+DESCRIPTION="Advanced molecule editor and visualizer 2 - libraries"
+HOMEPAGE="https://www.openchemistry.org/ https://github.com/OpenChemistry/avogadrolibs"
+SRC_URI="
+	https://github.com/OpenChemistry/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz
+	vtk? ( https://github.com/psavery/genXrdPattern/releases/download/1.0-static/linux64-genXrdPattern )
+"
+
+SLOT="0"
+LICENSE="BSD GPL-2+"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+
+# static-plugins needs to be enabled until upstream fixes
+# https://github.com/OpenChemistry/avogadrolibs/issues/436
+#IUSE="archive doc hdf5 qt5 static-plugins test vtk"
+IUSE="archive doc hdf5 qt5 test vtk"
+RESTRICT="!test? ( test )"
+
+REQUIRED_USE="vtk? ( qt5 )"
+
+# TODO: Not yet packaged:
+# sci-libs/libmsym (https://github.com/mcodev31/libmsym)
+# sci-libs/spglib (https://atztogo.github.io/spglib/)
+RDEPEND="
+	dev-libs/jsoncpp:=
+	>=sci-chemistry/molequeue-0.7
+	sci-libs/spglib
+	archive? ( app-arch/libarchive )
+	hdf5? ( sci-libs/hdf5:= )
+	qt5? (
+		dev-qt/qtconcurrent:5
+		dev-qt/qtcore:5
+		dev-qt/qtgui:5
+		dev-qt/qtnetwork:5
+		dev-qt/qtwidgets:5
+		media-libs/glew:0=
+		virtual/opengl
+	)
+	vtk? ( sci-libs/vtk[qt5,views] )
+"
+DEPEND="${RDEPEND}
+	dev-cpp/eigen:3
+	qt5? ( dev-qt/linguist-tools:5 )
+	test? ( dev-cpp/gtest )"
+
+PATCHES=(
+	# https://github.com/OpenChemistry/avogadrolibs/issues/449
+	"${FILESDIR}"/${PN}-1.93.0-fix_AvogadroLibsConfig.patch
+)
+
+src_unpack() {
+	default
+	if use vtk; then
+		cp "${DISTDIR}"/linux64-genXrdPattern "${WORKDIR}/genXrdPattern" || die
+	fi
+}
+
+src_configure() {
+	# -DBUILD_STATIC_PLUGINS=$(usex static-plugins)
+	local mycmakeargs=(
+		-DCMAKE_INSTALL_DOCDIR="${EPREFIX}/usr/share/doc/${PF}"
+		-DUSE_PROTOCALL=OFF
+		-DBUILD_GPL_PLUGINS=ON
+		-DUSE_MOLEQUEUE=ON
+		-DUSE_MMTF=OFF
+		-DUSE_LIBMSYM=OFF
+		-DUSE_SPGLIB=OFF
+		-DUSE_PYTHON=OFF
+		-DUSE_LIBARCHIVE=$(usex archive)
+		-DBUILD_DOCUMENTATION=$(usex doc)
+		-DUSE_HDF5=$(usex hdf5)
+		-DENABLE_TRANSLATIONS=$(usex qt5)
+		-DUSE_OPENGL=$(usex qt5)
+		-DUSE_QT=$(usex qt5)
+		-DBUILD_STATIC_PLUGINS=ON
+		-DENABLE_TESTING=$(usex test)
+		-DUSE_VTK=$(usex vtk)
+	)
+	use vtk && mycmakeargs+=(
+		-DBUNDLED_GENXRDPATTERN="${WORKDIR}/genXrdPattern"
+	)
+
+	cmake-utils_src_configure
+}
diff --git a/sci-libs/avogadrolibs/files/avogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch b/sci-libs/avogadrolibs/files/avogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch
new file mode 100644
index 000000000000..5eb316af9414
--- /dev/null
+++ b/sci-libs/avogadrolibs/files/avogadrolibs-1.93.0-fix_AvogadroLibsConfig.patch
@@ -0,0 +1,11 @@
+--- a/cmake/AvogadroLibsConfig.cmake.orig.in	2016-12-01 22:17:48.000000000 +0100
++++ b/cmake/AvogadroLibsConfig.cmake.in	2017-03-11 20:39:36.462581381 +0100
+@@ -10,7 +10,7 @@
+ 
+ set(AvogadroLibs_INSTALL_PREFIX  "@CMAKE_INSTALL_PREFIX@")
+ set(AvogadroLibs_INCLUDE_DIRS    "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_INCLUDE_DIR@")
+-set(AvogadroLibs_LIBRARY_DIR     "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_LIBRARY_DIR@@LIB_SUFFIX@")
++set(AvogadroLibs_LIBRARY_DIR     "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_LIBRARY_DIR@")
+ set(AvogadroLibs_RUNTIME_DIR     "${AvogadroLibs_INSTALL_PREFIX}/@INSTALL_RUNTIME_DIR@")
+ set(AvogadroLibs_CMAKE_DIR       "${AvogadroLibs_LIBRARY_DIR}/cmake/avogadrolibs")
+