proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

6 files changed, 278 insertions, 0 deletions

diff --git a/sci-mathematics/flint/files/flint-2.4.3-cflags-ldflags.patch b/sci-mathematics/flint/files/flint-2.4.3-cflags-ldflags.patch
new file mode 100644
index 000000000000..f0a2ec8531b0
--- /dev/null
+++ b/sci-mathematics/flint/files/flint-2.4.3-cflags-ldflags.patch
@@ -0,0 +1,33 @@
+commit afadc8d05674a0e3e2fcf6dfbcf5f3c8f9133119
+Author: hasufell <hasufell@hasufell.de>
+Date:   Sun May 18 19:32:59 2014 +0200
+
+    Respect CFLAGS/CXXFLAGS/LDFLAGS, fixes #66
+    
+    Even in linking command CFLAGS should be respected, no matter
+    if all objects have already been compiled or not. Some flags
+    affect both linking and object compilation and users shouldn't
+    be required to figure them out. This is standard in most build
+    systems anyway.
+    
+    Reorderd the linker line a bit, so it matches common practice,
+    although this doesn't matter technically (except that LDFLAGS
+    must go before libraries we link against).
+
+diff --git a/Makefile.in b/Makefile.in
+index a522ac1..6dda689 100644
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -104,10 +104,10 @@ $(FLINT_LIB): $(LOBJS) $(LIB_SOURCES) $(EXT_SOURCES) $(HEADERS) $(EXT_HEADERS) |
+ 	$(AT)$(foreach dir, $(BUILD_DIRS), mkdir -p build/$(dir); BUILD_DIR=../build/$(dir); export BUILD_DIR; MOD_DIR=$(dir); export MOD_DIR; $(MAKE) -f ../Makefile.subdirs -C $(dir) shared || exit $$?;)
+ 	$(AT)if [ "$(WANT_NTL)" -eq "1" ]; then \
+ 	  $(MAKE) build/interfaces/NTL-interface.lo; \
+-	  $(CXX) $(ABI_FLAG) -shared $(EXTRA_SHARED_FLAGS) build/interfaces/NTL-interface.lo $(LOBJS) $(MOD_LOBJS) $(EXT_OBJS) $(LIBS2) -o $(FLINT_LIB); \
++	  $(CXX) $(CXXFLAGS) $(ABI_FLAG) -shared $(EXTRA_SHARED_FLAGS) build/interfaces/NTL-interface.lo $(LOBJS) $(MOD_LOBJS) $(EXT_OBJS) -o $(FLINT_LIB) $(LDFLAGS) $(LIBS2); \
+ 	fi
+ 	$(AT)if [ "$(WANT_NTL)" -ne "1" ]; then \
+-	  $(CC) $(ABI_FLAG) -shared $(EXTRA_SHARED_FLAGS) $(LOBJS) $(MOD_LOBJS) $(EXT_OBJS) $(LIBS2) -o $(FLINT_LIB); \
++	  $(CC) $(CFLAGS) $(ABI_FLAG) -shared $(EXTRA_SHARED_FLAGS) $(LOBJS) $(MOD_LOBJS) $(EXT_OBJS) -o $(FLINT_LIB) $(LDFLAGS) $(LIBS2); \
+ 	fi
+ 
+ libflint.a: $(OBJS) $(LIB_SOURCES) $(EXT_SOURCES) $(HEADERS) $(EXT_HEADERS) | build build/interfaces
diff --git a/sci-mathematics/flint/files/flint-2.4.3-libdir.patch b/sci-mathematics/flint/files/flint-2.4.3-libdir.patch
new file mode 100644
index 000000000000..a569be40b8b8
--- /dev/null
+++ b/sci-mathematics/flint/files/flint-2.4.3-libdir.patch
@@ -0,0 +1,44 @@
+From 27eb23c1844029ee64907500bd8aa87097ffcd32 Mon Sep 17 00:00:00 2001
+From: hasufell <hasufell@hasufell.de>
+Date: Sun, 18 May 2014 18:46:24 +0200
+Subject: [PATCH] Allow to control LIBDIR
+
+Some distributions have lib32/lib64 and need to control
+the destination properly.
+---
+ Makefile.in | 8 +++++---
+ 1 file changed, 5 insertions(+), 3 deletions(-)
+
+diff --git a/Makefile.in b/Makefile.in
+index c16f838..b6ea4c9 100644
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -4,6 +4,8 @@ else
+   $(DLPATH):=$(DLPATH_ADD)
+ endif
+ 
++LIBDIR=lib
++
+ QUIET_CC  = @echo '   ' CC  ' ' $@;
+ QUIET_CXX = @echo '   ' CXX ' ' $@;
+ QUIET_AR  = @echo '   ' AR  ' ' $@;
+@@ -169,13 +171,13 @@ else
+ endif
+ 
+ install: library
+-	mkdir -p $(DESTDIR)$(PREFIX)/lib
++	mkdir -p $(DESTDIR)$(PREFIX)/$(LIBDIR)
+ 	mkdir -p $(DESTDIR)$(PREFIX)/include/flint
+ 	$(AT)if [ "$(FLINT_SHARED)" -eq "1" ]; then \
+-		cp $(FLINT_LIB) $(DESTDIR)$(PREFIX)/lib; \
++		cp $(FLINT_LIB) $(DESTDIR)$(PREFIX)/$(LIBDIR); \
+ 	fi
+ 	$(AT)if [ "$(FLINT_STATIC)" -eq "1" ]; then \
+-		cp libflint.a $(DESTDIR)$(PREFIX)/lib; \
++		cp libflint.a $(DESTDIR)$(PREFIX)/$(LIBDIR); \
+ 	fi
+ 	cp $(HEADERS) $(DESTDIR)$(PREFIX)/include/flint
+ 	$(AT)if [ ! -z $(EXT_HEADERS) ]; then \
+-- 
+1.9.3
+
diff --git a/sci-mathematics/flint/files/flint-2.4.3-whitespaces.patch b/sci-mathematics/flint/files/flint-2.4.3-whitespaces.patch
new file mode 100644
index 000000000000..3d63aedeab3c
--- /dev/null
+++ b/sci-mathematics/flint/files/flint-2.4.3-whitespaces.patch
@@ -0,0 +1,54 @@
+From 3506d617ef9dfc5184aa99be05a25e4f73d6c3f6 Mon Sep 17 00:00:00 2001
+From: hasufell <hasufell@hasufell.de>
+Date: Sun, 18 May 2014 18:47:27 +0200
+Subject: [PATCH] Quote variables that could contain whitespaces
+
+Make does NOT take care of this in this context. It's
+not a variable assignment and installation would fail
+if DESTDIR contains any whitespace.
+---
+ Makefile.in | 22 +++++++++++-----------
+ 1 file changed, 11 insertions(+), 11 deletions(-)
+
+diff --git a/Makefile.in b/Makefile.in
+index b6ea4c9..a522ac1 100644
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -171,23 +171,23 @@ else
+ endif
+ 
+ install: library
+-	mkdir -p $(DESTDIR)$(PREFIX)/$(LIBDIR)
+-	mkdir -p $(DESTDIR)$(PREFIX)/include/flint
++	mkdir -p "$(DESTDIR)$(PREFIX)/$(LIBDIR)"
++	mkdir -p "$(DESTDIR)$(PREFIX)/include/flint"
+ 	$(AT)if [ "$(FLINT_SHARED)" -eq "1" ]; then \
+-		cp $(FLINT_LIB) $(DESTDIR)$(PREFIX)/$(LIBDIR); \
++		cp $(FLINT_LIB) "$(DESTDIR)$(PREFIX)/$(LIBDIR)"; \
+ 	fi
+ 	$(AT)if [ "$(FLINT_STATIC)" -eq "1" ]; then \
+-		cp libflint.a $(DESTDIR)$(PREFIX)/$(LIBDIR); \
++		cp libflint.a "$(DESTDIR)$(PREFIX)/$(LIBDIR)"; \
+ 	fi
+-	cp $(HEADERS) $(DESTDIR)$(PREFIX)/include/flint
++	cp $(HEADERS) "$(DESTDIR)$(PREFIX)/include/flint"
+ 	$(AT)if [ ! -z $(EXT_HEADERS) ]; then \
+-		cp $(EXT_HEADERS) $(DESTDIR)$(PREFIX)/include/flint; \
++		cp $(EXT_HEADERS) "$(DESTDIR)$(PREFIX)/include/flint"; \
+ 	fi
+-	mkdir -p $(DESTDIR)$(FLINT_CPIMPORT_DIR)
+-	cp qadic/CPimport.txt $(DESTDIR)$(FLINT_CPIMPORT_DIR)
+-	mkdir -p $(DESTDIR)$(PREFIX)/include/flint/flintxx
+-	cp flintxx/*.h $(DESTDIR)$(PREFIX)/include/flint/flintxx
+-	cp *xx.h $(DESTDIR)$(PREFIX)/include/flint
++	mkdir -p "$(DESTDIR)$(FLINT_CPIMPORT_DIR)"
++	cp qadic/CPimport.txt "$(DESTDIR)$(FLINT_CPIMPORT_DIR)"
++	mkdir -p "$(DESTDIR)$(PREFIX)/include/flint/flintxx"
++	cp flintxx/*.h "$(DESTDIR)$(PREFIX)/include/flint/flintxx"
++	cp *xx.h "$(DESTDIR)$(PREFIX)/include/flint"
+ 
+ build:
+ 	mkdir -p build
+-- 
+1.9.3
+
diff --git a/sci-mathematics/flint/files/flint-2.4.4-test.patch b/sci-mathematics/flint/files/flint-2.4.4-test.patch
new file mode 100644
index 000000000000..11b7cfe21115
--- /dev/null
+++ b/sci-mathematics/flint/files/flint-2.4.4-test.patch
@@ -0,0 +1,19 @@
+commit 5e3d4a0504158f70d227e7cfc03985fe9a646797
+Author: hasufell <hasufell@hasufell.de>
+Date:   Wed Jul 2 12:58:50 2014 +0200
+
+    Fix NTL test build
+
+diff --git a/Makefile.in b/Makefile.in
+index 6dda689..e9de7da 100644
+--- a/Makefile.in
++++ b/Makefile.in
+@@ -214,7 +214,7 @@ build/interfaces/NTL-interface.o: interfaces/NTL-interface.cpp NTL-interface.h
+ 	$(QUIET_CXX) $(CXX) $(CFLAGS) $(INCS) -c $< -o $@;
+ 
+ build/interfaces/test/t-NTL-interface$(EXEEXT): interfaces/test/t-NTL-interface.cpp
+-	$(QUIET_CXX) $(CXX) $(CFLAGS) $(INCS) $< build/interfaces/NTL-interface.o -o $@ $(LIBS);
++	$(QUIET_CXX) $(CXX) $(CFLAGS) $(INCS) $< build/interfaces/NTL-interface.lo -o $@ $(LIBS);
+ 
+ print-%:
+ 	@echo '$*=$($*)'
diff --git a/sci-mathematics/flint/files/flint-2.4.5-gmp6-compat.patch b/sci-mathematics/flint/files/flint-2.4.5-gmp6-compat.patch
new file mode 100644
index 000000000000..559cbe51fb28
--- /dev/null
+++ b/sci-mathematics/flint/files/flint-2.4.5-gmp6-compat.patch
@@ -0,0 +1,115 @@
+From a7f911140e7d0a0125653a40aa2c5fe257bd78f5 Mon Sep 17 00:00:00 2001
+From: Fredrik Johansson <fredrik.johansson@gmail.com>
+Date: Thu, 18 Sep 2014 14:49:05 +0200
+Subject: [PATCH] redefine fmpz_invmod to consider any integer invertible mod 1
+ (for gmp 6.0 compatibility)
+
+---
+ fmpz/doc/fmpz.txt    |  3 ++-
+ fmpz/invmod.c        | 11 +++++++++--
+ fmpz/test/t-invmod.c | 21 +++++++++++++++++----
+ 3 files changed, 28 insertions(+), 7 deletions(-)
+
+diff --git a/fmpz/doc/fmpz.txt b/fmpz/doc/fmpz.txt
+index fb422d8..2ada719 100644
+--- a/fmpz/doc/fmpz.txt
++++ b/fmpz/doc/fmpz.txt
+@@ -899,7 +899,8 @@ int fmpz_invmod(fmpz_t f, const fmpz_t g, const fmpz_t h)
+     Sets $f$ to the inverse of $g$ modulo $h$.  The value of $h$ may 
+     not be $0$ otherwise an exception results.  If the inverse exists 
+     the return value will be non-zero, otherwise the return value will
+-    be $0$ and the value of $f$ undefined. 
++    be $0$ and the value of $f$ undefined. As a special case, we
++    consider any number invertible modulo $h = \pm 1$, with inverse 0.
+ 
+ void fmpz_negmod(fmpz_t f, const fmpz_t g, const fmpz_t h)
+ 
+diff --git a/fmpz/invmod.c b/fmpz/invmod.c
+index a0cf601..0e20f39 100644
+--- a/fmpz/invmod.c
++++ b/fmpz/invmod.c
+@@ -67,7 +67,11 @@ fmpz_invmod(fmpz_t f, const fmpz_t g, const fmpz_t h)
+             if (c2 < WORD(0))
+                 c2 = -c2;
+             if (c2 == WORD(1))
+-                return 0;       /* special case not handled by n_invmod */
++            {
++                fmpz_zero(f);
++                return 1;       /* special case not handled by n_invmod */
++            }
++
+             gcd = z_gcdinv(&inv, c1, c2);
+ 
+             return (gcd == UWORD(1) ? fmpz_set_si(f, inv), 1 : 0);
+@@ -106,7 +110,10 @@ fmpz_invmod(fmpz_t f, const fmpz_t g, const fmpz_t h)
+             if (c2 < WORD(0))
+                 c2 = -c2;
+             if (c2 == WORD(1))
+-                return 0;       /* special case not handled by z_gcd_invert */
++            {
++                fmpz_zero(f);
++                return 1;       /* special case not handled by z_gcd_invert */
++            }
+             /* reduce g mod h first */
+ 
+             r = flint_mpz_fdiv_ui(COEFF_TO_PTR(c1), c2);
+diff --git a/fmpz/test/t-invmod.c b/fmpz/test/t-invmod.c
+index aea236e..8ff1c7f 100644
+--- a/fmpz/test/t-invmod.c
++++ b/fmpz/test/t-invmod.c
+@@ -30,6 +30,19 @@
+ #include "ulong_extras.h"
+ #include "fmpz.h"
+ 
++/* Use the definiton of GMP versions >= 6.0 */
++int
++mpz_invert2(mpz_t a, const mpz_t b, const mpz_t c)
++{
++    if (mpz_cmpabs_ui(c, 1) == 0)
++    {
++        mpz_set_ui(a, 0);
++        return 1;
++    }
++    else
++        return mpz_invert(a, b, c);
++}
++
+ int
+ main(void)
+ {
+@@ -63,7 +76,7 @@ main(void)
+         fmpz_get_mpz(e, b);
+ 
+         r1 = fmpz_invmod(c, a, b);
+-        r2 = mpz_invert(f, d, e);
++        r2 = mpz_invert2(f, d, e);
+ 
+         fmpz_get_mpz(g, c);
+ 
+@@ -106,7 +119,7 @@ main(void)
+         fmpz_get_mpz(d, a);
+ 
+         r1 = fmpz_invmod(c, a, a);
+-        r2 = mpz_invert(f, d, d);
++        r2 = mpz_invert2(f, d, d);
+ 
+         fmpz_get_mpz(g, c);
+ 
+@@ -149,7 +162,7 @@ main(void)
+         fmpz_get_mpz(e, b);
+ 
+         r1 = fmpz_invmod(a, a, b);
+-        r2 = mpz_invert(f, d, e);
++        r2 = mpz_invert2(f, d, e);
+ 
+         fmpz_get_mpz(g, a);
+ 
+@@ -192,7 +205,7 @@ main(void)
+         fmpz_get_mpz(e, b);
+ 
+         r1 = fmpz_invmod(b, a, b);
+-        r2 = mpz_invert(f, d, e);
++        r2 = mpz_invert2(f, d, e);
+ 
+         fmpz_get_mpz(g, b);
+ 
diff --git a/sci-mathematics/flint/files/flint-2.4.5-ntl62.patch b/sci-mathematics/flint/files/flint-2.4.5-ntl62.patch
new file mode 100644
index 000000000000..e08fa774e298
--- /dev/null
+++ b/sci-mathematics/flint/files/flint-2.4.5-ntl62.patch
@@ -0,0 +1,13 @@
+diff -druN flint-2.5.orig/interfaces/NTL-interface.cpp flint-2.5/interfaces/NTL-interface.cpp
+--- flint-2.5.orig/interfaces/NTL-interface.cpp	2014-07-16 07:50:40.000000000 -0700
++++ flint-2.5/interfaces/NTL-interface.cpp	2014-08-26 07:51:55.585884615 -0700
+@@ -32,9 +32,7 @@
+ #include <NTL/ZZ.h>
+ #include <NTL/ZZX.h>
+ #include <NTL/mat_ZZ.h>
+-#include <NTL/lip.h>
+ #include <NTL/ctools.h>
+-#include <NTL/g_lip.h>
+ #include <gmp.h>
+ 
+ #include "flint.h"