diff options
| -rw-r--r-- | sci-chemistry/reduce/Manifest | 2 | ||||
| -rw-r--r-- | sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild | 53 | ||||
| -rw-r--r-- | sci-chemistry/reduce/reduce-3.14.080821.ebuild | 50 |
3 files changed, 0 insertions, 105 deletions
diff --git a/sci-chemistry/reduce/Manifest b/sci-chemistry/reduce/Manifest index 802e0d822081..e1b725c10b61 100644 --- a/sci-chemistry/reduce/Manifest +++ b/sci-chemistry/reduce/Manifest @@ -1,3 +1 @@ -DIST reduce.3.13.080428.src.tgz 4387407 SHA256 6290dad33e395c5a40fe3634db86fb6035ea88ce19c3f25b80fb6378507ac066 SHA512 c976b4cc647b66d5608aa24e6ca159a15a5b2c583d4935b3062d7a9020530b74331aca021ed0fd4f5e552d5c3d408ed6553317529df25a118e2859b89d1f6bf2 WHIRLPOOL d05a8484b9d4a3f39f815880ef27e17a958a60baafd11b2d21d98f29b0b33c70b8b2c071af2e5f17bbf57037411b36e08f43ab3757d26345b034aa12683fa659 -DIST reduce.3.14.080821.src.tgz 5199731 SHA256 0c32f3e9f818b976e0996f088639a194cde63f227eff32c35e14526ec05c930a SHA512 9c8d72983b376b1f741afeb08630ad69b6888f526aac0ad72c658e96a6c2d6f17df60dfbf03a35a217be254bbb858f99bd2088aba8877e504a45270371dbad44 WHIRLPOOL aac80449eeceae8afbc5ec8d4ea53152c4f0bff7080fc36d7d74d8e0aaad8e6cb3e5750d67dcab6c7669f58a5f09910a3253db6371828257d03832f1ccbc3418 DIST reduce.3.16.111118.src.zip 20342632 SHA256 a9f45dd31eb7022e056cdab1efbbed17fd8be7453396313904c95c839d41dbb3 SHA512 f7b4d8d91f1f57e9e96c91139fa919c570aebd07f3a440faf3df54bf5deb3a05ad998996a24b5fe9aff6280e00329c9914e338cbfe802c047c055f52ce8312a9 WHIRLPOOL 5d5e3c988e39986888eb23907e87ad180a2a441cf236c53406fc43f1cddd25e9e9051ae41d287f35bcf17f3882d720f9cee4c925cbae32139de5848c1fbcccdd diff --git a/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild b/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild deleted file mode 100644 index 2fac50aa8a33..000000000000 --- a/sci-chemistry/reduce/reduce-3.13.080428-r1.ebuild +++ /dev/null @@ -1,53 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=3 - -inherit eutils toolchain-funcs - -MY_P="${PN}.${PV}.src" - -DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file" -HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php" -SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.tgz" - -LICENSE="richardson" -SLOT="0" -KEYWORDS="amd64 ppc x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - app-arch/unzip" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - epatch \ - "${FILESDIR}"/${PV}-LDFLAGS.patch \ - "${FILESDIR}"/${PV}-CFLAGS.patch -} - -src_compile() { - DICT_DIR="/usr/share/reduce" - DICT_FILE="reduce_het_dict.txt" - - emake \ - CC="$(tc-getCC)" \ - CXX="$(tc-getCXX)" \ - OPT="${CXXFLAGS}" \ - DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FILE}" \ - || die "make failed" -} - -src_install() { - dobin "${S}"/reduce_src/reduce || die - insinto ${DICT_DIR} - doins "${S}"/${DICT_FILE} "${S}"/reduce_wwPDB_het_dict.txt || die - dodoc README.usingReduce.txt || die -} - -pkg_postinst() { - elog "To use the PDBv3 dictionary instead of PDBv2, set the environment" - elog "variable REDUCE_HET_DICT to ${EPREFIX}/usr/share/reduce/reduce_wwPDB_het_dict.txt" -} diff --git a/sci-chemistry/reduce/reduce-3.14.080821.ebuild b/sci-chemistry/reduce/reduce-3.14.080821.ebuild deleted file mode 100644 index a8fb9cb6fa95..000000000000 --- a/sci-chemistry/reduce/reduce-3.14.080821.ebuild +++ /dev/null @@ -1,50 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=4 - -inherit eutils toolchain-funcs - -MY_P="${PN}.${PV}.src" - -DESCRIPTION="Adds hydrogens to a Protein Data Bank (PDB) molecule structure file" -HOMEPAGE="http://kinemage.biochem.duke.edu/software/reduce.php" -SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/reduce31/${MY_P}.tgz" - -LICENSE="richardson" -SLOT="0" -KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" -IUSE="" - -RDEPEND="" -DEPEND="${RDEPEND} - app-arch/unzip" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - epatch \ - "${FILESDIR}"/3.13.080428-LDFLAGS.patch \ - "${FILESDIR}"/${PV}-CFLAGS.patch -} - -src_compile() { - DICT_DIR="/usr/share/reduce" - DICT_FOLD="reduce_het_dict.txt" - DICT_FNEW="reduce_wwPDB_het_dict.txt" - - emake clean - emake \ - CC="$(tc-getCC)" \ - CXX="$(tc-getCXX)" \ - OPT="${CXXFLAGS}" \ - DICT_HOME="${EPREFIX}/${DICT_DIR}/${DICT_FNEW}" \ - DICT_OLD="${EPREFIX}/${DICT_DIR}/${DICT_FOLD}" -} - -src_install() { - dobin "${S}"/reduce_src/reduce - insinto ${DICT_DIR} - doins "${S}"/${DICT_FOLD} "${S}"/${DICT_FNEW} - dodoc README.usingReduce.txt -} |