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Diffstat (limited to 'sci-biology/arb/arb-5.1-r1.ebuild')
-rw-r--r-- | sci-biology/arb/arb-5.1-r1.ebuild | 77 |
1 files changed, 0 insertions, 77 deletions
diff --git a/sci-biology/arb/arb-5.1-r1.ebuild b/sci-biology/arb/arb-5.1-r1.ebuild deleted file mode 100644 index f52beded359c..000000000000 --- a/sci-biology/arb/arb-5.1-r1.ebuild +++ /dev/null @@ -1,77 +0,0 @@ -# Copyright 1999-2016 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=2 - -inherit eutils toolchain-funcs - -DESCRIPTION="Tools for DNA/RNA sequence database handling and phylogenetic analysis" -HOMEPAGE="http://www.arb-home.de/" -SRC_URI=" - http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz - mirror://gentoo/${P}-glibc2.10.patch.bz2 - https://dev.gentoo.org/~jlec/${P}-linker.patch.bz2" - -LICENSE="arb" -SLOT="0" -IUSE="+opengl" -KEYWORDS="~amd64 ~x86" - -DEPEND=" - app-text/sablotron - media-libs/libpng - media-libs/tiff - www-client/lynx - x11-libs/libXaw - x11-libs/libXpm - x11-libs/motif:0 - opengl? ( - media-libs/glew - media-libs/freeglut - || ( - media-libs/mesa[motif] - ( media-libs/mesa x11-libs/libGLw ) ) )" -RDEPEND="${DEPEND} - sci-visualization/gnuplot" -# Recommended: libmotif3 gv xfig xterm treetool java - -src_unpack() { - unpack ${A} - mv arbsrc* ${P} -} - -src_prepare() { - epatch \ - "${WORKDIR}"/${P}-glibc2.10.patch\ - "${WORKDIR}"/${P}-linker.patch \ - "${FILESDIR}"/${PV}-libs.patch \ - "${FILESDIR}"/${PV}-bfr-overflow.patch - sed -i \ - -e 's/all: checks/all:/' \ - -e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \ - -e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \ - -e 's/--export-dynamic/-Wl,--export-dynamic/g' \ - "${S}/Makefile" || die - cp config.makefile.template config.makefile - sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die - use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile - use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile - emake ARBHOME="${S}" links || die -} - -src_compile() { - emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile || die - use amd64 && mv arb.tgz arb.64.gentoo.tgz - use x86 && mv arb.tgz arb.32.gentoo.tgz - ln -s arb.*.tgz arb.tgz || die -} - -src_install() { - ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die - cat <<- EOF > "${S}/99${PN}" - ARBHOME=/opt/arb - PATH=/opt/arb/bin - LD_LIBRARY_PATH=/opt/arb/lib - EOF - doenvd "${S}/99${PN}" || die -} |