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Diffstat (limited to 'sci-biology/arb/arb-5.1-r1.ebuild')
-rw-r--r--sci-biology/arb/arb-5.1-r1.ebuild77
1 files changed, 0 insertions, 77 deletions
diff --git a/sci-biology/arb/arb-5.1-r1.ebuild b/sci-biology/arb/arb-5.1-r1.ebuild
deleted file mode 100644
index f52beded359c..000000000000
--- a/sci-biology/arb/arb-5.1-r1.ebuild
+++ /dev/null
@@ -1,77 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=2
-
-inherit eutils toolchain-funcs
-
-DESCRIPTION="Tools for DNA/RNA sequence database handling and phylogenetic analysis"
-HOMEPAGE="http://www.arb-home.de/"
-SRC_URI="
- http://download.arb-home.de/release/arb_${PV}/arbsrc.tgz -> ${P}.tgz
- mirror://gentoo/${P}-glibc2.10.patch.bz2
- https://dev.gentoo.org/~jlec/${P}-linker.patch.bz2"
-
-LICENSE="arb"
-SLOT="0"
-IUSE="+opengl"
-KEYWORDS="~amd64 ~x86"
-
-DEPEND="
- app-text/sablotron
- media-libs/libpng
- media-libs/tiff
- www-client/lynx
- x11-libs/libXaw
- x11-libs/libXpm
- x11-libs/motif:0
- opengl? (
- media-libs/glew
- media-libs/freeglut
- || (
- media-libs/mesa[motif]
- ( media-libs/mesa x11-libs/libGLw ) ) )"
-RDEPEND="${DEPEND}
- sci-visualization/gnuplot"
-# Recommended: libmotif3 gv xfig xterm treetool java
-
-src_unpack() {
- unpack ${A}
- mv arbsrc* ${P}
-}
-
-src_prepare() {
- epatch \
- "${WORKDIR}"/${P}-glibc2.10.patch\
- "${WORKDIR}"/${P}-linker.patch \
- "${FILESDIR}"/${PV}-libs.patch \
- "${FILESDIR}"/${PV}-bfr-overflow.patch
- sed -i \
- -e 's/all: checks/all:/' \
- -e "s/GCC:=.*/GCC=$(tc-getCC) ${CFLAGS}/" \
- -e "s/GPP:=.*/GPP=$(tc-getCXX) ${CXXFLAGS}/" \
- -e 's/--export-dynamic/-Wl,--export-dynamic/g' \
- "${S}/Makefile" || die
- cp config.makefile.template config.makefile
- sed -i -e '/^[ \t]*read/ d' -e 's/SHELL_ANS=0/SHELL_ANS=1/' "${S}/arb_install.sh" || die
- use amd64 && sed -i -e 's/ARB_64 := 0/ARB_64 := 1/' config.makefile
- use opengl || sed -i -e 's/OPENGL := 1/OPENGL := 0/' config.makefile
- emake ARBHOME="${S}" links || die
-}
-
-src_compile() {
- emake ARBHOME="${S}" PATH="${PATH}:${S}/bin" LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:${S}/lib" tarfile || die
- use amd64 && mv arb.tgz arb.64.gentoo.tgz
- use x86 && mv arb.tgz arb.32.gentoo.tgz
- ln -s arb.*.tgz arb.tgz || die
-}
-
-src_install() {
- ARBHOME="${D}/opt/arb" "${S}/arb_install.sh" || die
- cat <<- EOF > "${S}/99${PN}"
- ARBHOME=/opt/arb
- PATH=/opt/arb/bin
- LD_LIBRARY_PATH=/opt/arb/lib
- EOF
- doenvd "${S}/99${PN}" || die
-}