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Diffstat (limited to 'sci-biology/bowtie/bowtie-0.12.8.ebuild')
-rw-r--r-- | sci-biology/bowtie/bowtie-0.12.8.ebuild | 44 |
1 files changed, 0 insertions, 44 deletions
diff --git a/sci-biology/bowtie/bowtie-0.12.8.ebuild b/sci-biology/bowtie/bowtie-0.12.8.ebuild deleted file mode 100644 index c26c986ed194..000000000000 --- a/sci-biology/bowtie/bowtie-0.12.8.ebuild +++ /dev/null @@ -1,44 +0,0 @@ -# Copyright 1999-2013 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -inherit eutils toolchain-funcs - -DESCRIPTION="An ultrafast memory-efficient short read aligner" -HOMEPAGE="http://bowtie-bio.sourceforge.net/" -SRC_URI="mirror://sourceforge/bowtie-bio/${P}-src.zip" - -LICENSE="Artistic" -SLOT="0" -IUSE="" -KEYWORDS="amd64 x86 ~x64-macos" - -DEPEND="app-arch/unzip" -RDEPEND="" - -# NB: Bundles code from Maq (http://maq.sf.net) and the SeqAn library (http://www.seqan.de) -# TODO: properly report system CFLAGS in -DCOMPILE_OPTIONS - -src_prepare() { - epatch "${FILESDIR}"/${P}-gcc-47.patch -} - -src_compile() { - unset CFLAGS - emake \ - CC="$(tc-getCC)" \ - CPP="$(tc-getCXX)" \ - CXX="$(tc-getCXX)" \ - EXTRA_FLAGS="${LDFLAGS}" \ - RELEASE_FLAGS="" -} - -src_install() { - dobin bowtie bowtie-* - exeinto /usr/share/${PN}/scripts - doexe scripts/* - newman MANUAL bowtie.1 - dodoc AUTHORS NEWS TUTORIAL -} |