1 files changed, 36 insertions, 0 deletions
diff --git a/sci-biology/gmap/gmap-2011.10.07.ebuild b/sci-biology/gmap/gmap-2011.10.07.ebuild
new file mode 100644
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+++ b/sci-biology/gmap/gmap-2011.10.07.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="2"
+
+MY_PV=${PV//./-}
+
+DESCRIPTION="A Genomic Mapping and Alignment Program for mRNA and EST Sequences"
+HOMEPAGE="http://www.gene.com/share/gmap/"
+SRC_URI="http://research-pub.gene.com/gmap/src/gmap-gsnap-${MY_PV}.tar.gz"
+
+LICENSE="gmap"
+SLOT="0"
+IUSE="+samtools +goby"
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="samtools? ( sci-biology/samtools )
+	goby? ( sci-biology/goby-cpp )"
+RDEPEND="${DEPEND}"
+
+S="${WORKDIR}/gmap-${MY_PV}"
+
+src_configure() {
+	econf $(use_with samtools) \
+		$(use_with goby goby /usr)
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS ChangeLog README
+}
+
+src_test() {
+	emake check || die
+}