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Diffstat (limited to 'sci-biology/paml/paml-4.9j.ebuild')
-rw-r--r-- | sci-biology/paml/paml-4.9j.ebuild | 43 |
1 files changed, 43 insertions, 0 deletions
diff --git a/sci-biology/paml/paml-4.9j.ebuild b/sci-biology/paml/paml-4.9j.ebuild new file mode 100644 index 000000000000..e8a5d07ee40c --- /dev/null +++ b/sci-biology/paml/paml-4.9j.ebuild @@ -0,0 +1,43 @@ +# Copyright 1999-2020 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +inherit toolchain-funcs + +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${P/-/}.tgz" + +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~amd64 ~x86" + +S="${WORKDIR}/${P/-/}" +PATCHES=( + "${FILESDIR}"/${PN}-4.9j-makefile.patch + "${FILESDIR}"/${PN}-4.9j-fno-common.patch +) + +src_configure() { + tc-export CC +} + +src_compile() { + emake -C src +} + +src_install() { + dobin src/{baseml,basemlg,codeml,evolver,pamp,mcmctree,infinitesites,yn00,chi2} + + dodoc -r README.txt doc/. + + insinto /usr/share/${PN}/control + doins *.ctl + + insinto /usr/share/${PN}/dat + doins -r stewart* *.dat dat/. + + insinto /usr/share/${PN} + doins -r examples +} |