diff options
Diffstat (limited to 'sci-biology/plink/plink-1.90_pre140514.ebuild')
-rw-r--r-- | sci-biology/plink/plink-1.90_pre140514.ebuild | 55 |
1 files changed, 55 insertions, 0 deletions
diff --git a/sci-biology/plink/plink-1.90_pre140514.ebuild b/sci-biology/plink/plink-1.90_pre140514.ebuild new file mode 100644 index 000000000000..45b80be23c36 --- /dev/null +++ b/sci-biology/plink/plink-1.90_pre140514.ebuild @@ -0,0 +1,55 @@ +# Copyright 1999-2015 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=5 + +inherit eutils toolchain-funcs + +DESCRIPTION="Whole genome association analysis toolset" +HOMEPAGE="http://pngu.mgh.harvard.edu/~purcell/plink/" +SRC_URI="http://pngu.mgh.harvard.edu/~purcell/static/bin/plink140514/plink_src.zip -> ${P}.zip" + +LICENSE="GPL-2" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND=" + app-arch/unzip + virtual/pkgconfig" +RDEPEND=" + sys-libs/zlib + virtual/cblas + virtual/lapack + " + +S="${WORKDIR}/" + +# Package collides with net-misc/putty. Renamed to p-link following discussion with Debian. +# Package contains bytecode-only jar gPLINK.jar. Ignored, notified upstream. + +src_prepare() { + sed \ + -e 's:zlib-1.2.8/zlib.h:zlib.h:g' \ + -i *.{c,h} || die + + sed \ + -e 's:g++:$(CXX):g' \ + -e 's:gcc:$(CC):g' \ + -e 's:gfortran:$(FC):g' \ + -i Makefile || die + tc-export PKG_CONFIG +} + +src_compile() { + emake \ + CXX=$(tc-getCXX) \ + CFLAGS="${CFLAGS}" \ + ZLIB="$($(tc-getPKG_CONFIG) --libs zlib)" \ + BLASFLAGS="$($(tc-getPKG_CONFIG) --libs lapack cblas)" +} + +src_install() { + newbin plink p-link +} |