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Diffstat (limited to 'sci-biology/recon/recon-1.06-r1.ebuild')
-rw-r--r--sci-biology/recon/recon-1.06-r1.ebuild36
1 files changed, 36 insertions, 0 deletions
diff --git a/sci-biology/recon/recon-1.06-r1.ebuild b/sci-biology/recon/recon-1.06-r1.ebuild
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+++ b/sci-biology/recon/recon-1.06-r1.ebuild
@@ -0,0 +1,36 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="4"
+
+inherit eutils
+
+DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
+HOMEPAGE="http://selab.janelia.org/recon.html http://www.repeatmasker.org/RepeatModeler.html"
+SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="examples"
+KEYWORDS="~amd64 ~x86"
+
+S="${WORKDIR}/RECON${PV}"
+
+src_prepare() {
+ epatch "${FILESDIR}"/${PV}-buffer-overflow.patch
+ sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die
+}
+
+src_compile() {
+ emake -C src
+}
+
+src_install() {
+ dobin scripts/*
+ exeinto /usr/libexec/${PN}
+ doexe src/{edgeredef,eledef,eleredef,famdef,imagespread}
+ dodoc 00README
+ insinto /usr/share/${PN}
+ use examples && doins -r Demos
+}