diff options
Diffstat (limited to 'sci-biology/vienna-rna/files/vienna-rna-1.8.3-gcc4.3.patch')
-rw-r--r-- | sci-biology/vienna-rna/files/vienna-rna-1.8.3-gcc4.3.patch | 76 |
1 files changed, 76 insertions, 0 deletions
diff --git a/sci-biology/vienna-rna/files/vienna-rna-1.8.3-gcc4.3.patch b/sci-biology/vienna-rna/files/vienna-rna-1.8.3-gcc4.3.patch new file mode 100644 index 000000000000..025822f45c91 --- /dev/null +++ b/sci-biology/vienna-rna/files/vienna-rna-1.8.3-gcc4.3.patch @@ -0,0 +1,76 @@ +diff -durr ViennaRNA-1.8.3.orig/Cluster/AS_main.c ViennaRNA-1.8.3/Cluster/AS_main.c +--- ViennaRNA-1.8.3.orig/Cluster/AS_main.c 2009-09-10 11:56:01.636674988 +0000 ++++ ViennaRNA-1.8.3/Cluster/AS_main.c 2009-09-10 11:58:32.915952366 +0000 +@@ -1,5 +1,6 @@ + #include <stdio.h> + #include <string.h> ++#include <stdlib.h> + #include "distance_matrix.h" + #include "statgeom.h" + #include "split.h" +diff -durr ViennaRNA-1.8.3.orig/Cluster/statgeom.c ViennaRNA-1.8.3/Cluster/statgeom.c +--- ViennaRNA-1.8.3.orig/Cluster/statgeom.c 2009-09-10 11:56:01.636674988 +0000 ++++ ViennaRNA-1.8.3/Cluster/statgeom.c 2009-09-10 11:58:53.192452141 +0000 +@@ -7,6 +7,7 @@ + #include <stdio.h> + #include <string.h> + #include <strings.h> ++#include <stdlib.h> + #include <ctype.h> + #include "utils.h" + #include "PS3D.h" +diff -durr ViennaRNA-1.8.3.orig/Cluster/treeplot.c ViennaRNA-1.8.3/Cluster/treeplot.c +--- ViennaRNA-1.8.3.orig/Cluster/treeplot.c 2009-09-10 11:56:01.636674988 +0000 ++++ ViennaRNA-1.8.3/Cluster/treeplot.c 2009-09-10 11:59:22.457509165 +0000 +@@ -1,5 +1,6 @@ + #include <stdio.h> + #include <string.h> ++#include <stdlib.h> + #include <math.h> + #include "distance_matrix.h" + #include "utils.h" +diff -durr ViennaRNA-1.8.3.orig/RNAforester/src/main.cpp ViennaRNA-1.8.3/RNAforester/src/main.cpp +--- ViennaRNA-1.8.3.orig/RNAforester/src/main.cpp 2009-09-10 11:56:01.624743558 +0000 ++++ ViennaRNA-1.8.3/RNAforester/src/main.cpp 2009-09-10 12:00:37.693252890 +0000 +@@ -19,6 +19,8 @@ + #include <list> + #include <sstream> + #include <string> ++#include <cstring> ++#include <climits> + #include <map> + + //#include <sys/timeb.h> +diff -durr ViennaRNA-1.8.3.orig/RNAforester/src/ppforestbase.h ViennaRNA-1.8.3/RNAforester/src/ppforestbase.h +--- ViennaRNA-1.8.3.orig/RNAforester/src/ppforestbase.h 2009-09-10 11:56:01.624743558 +0000 ++++ ViennaRNA-1.8.3/RNAforester/src/ppforestbase.h 2009-09-10 12:01:41.631932654 +0000 +@@ -16,6 +16,7 @@ + + #include <algorithm> + #include <cassert> ++#include <cstring> + + #include "misc.h" + #include "types.h" +diff -durr ViennaRNA-1.8.3.orig/RNAforester/src/rna_algebra.h ViennaRNA-1.8.3/RNAforester/src/rna_algebra.h +--- ViennaRNA-1.8.3.orig/RNAforester/src/rna_algebra.h 2009-09-10 11:56:01.620703294 +0000 ++++ ViennaRNA-1.8.3/RNAforester/src/rna_algebra.h 2009-09-10 12:02:29.687952726 +0000 +@@ -4,6 +4,7 @@ + #include <assert.h> + #include <algorithm> + #include <climits> ++#include <cstring> + + #include "algebra.h" + #include "debug.h" +diff -durr ViennaRNA-1.8.3.orig/Readseq/ureadseq.c ViennaRNA-1.8.3/Readseq/ureadseq.c +--- ViennaRNA-1.8.3.orig/Readseq/ureadseq.c 2009-09-10 11:56:01.632743452 +0000 ++++ ViennaRNA-1.8.3/Readseq/ureadseq.c 2009-09-10 12:03:15.343952776 +0000 +@@ -20,6 +20,7 @@ + #include <stdio.h> + #include <ctype.h> + #include <string.h> ++#include <stdlib.h> + + #define UREADSEQ_G + #include "ureadseq.h" |