1 files changed, 0 insertions, 120 deletions
diff --git a/sci-libs/libmems/files/libmems-1.6_p1-boost.patch b/sci-libs/libmems/files/libmems-1.6_p1-boost.patch
deleted file mode 100644
index 4f0c775a6d9c..000000000000
--- a/sci-libs/libmems/files/libmems-1.6_p1-boost.patch
+++ /dev/null
@@ -1,120 +0,0 @@
- libMems/Backbone.cpp           |  2 +-
- libMems/Files.h                | 64 +++++++++++++++++++++---------------------
- libMems/ProgressiveAligner.cpp |  2 +-
- 3 files changed, 34 insertions(+), 34 deletions(-)
-
-diff --git a/libMems/Backbone.cpp b/libMems/Backbone.cpp
-index 86698a9..0025cd8 100644
---- a/libMems/Backbone.cpp
-+++ b/libMems/Backbone.cpp
-@@ -15,7 +15,7 @@
- #include "libMems/Islands.h"
- #include "libMems/CompactGappedAlignment.h"
- 
--#include <boost/property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
- #include <boost/graph/graph_traits.hpp>
- #include <boost/graph/adjacency_list.hpp>
- #include <boost/graph/topological_sort.hpp>
-diff --git a/libMems/Files.h b/libMems/Files.h
-index 8d6e9be..8191065 100644
---- a/libMems/Files.h
-+++ b/libMems/Files.h
-@@ -22,44 +22,44 @@
- 
- #include "boost/filesystem/operations.hpp"
- #include "boost/filesystem/exception.hpp"
--#include "boost/algorithm/string.hpp"
-+#include "boost/algorithm/string.hpp"
- #include <string>
- #include <sstream>
- #include <iostream>
- #include <iomanip>
- 
- 
--/**
-- * Register a file name to be deleted before the process exits
-- * When passed an empty string, it does not add to the list of files to delete
-- * @param fname	The name of a file to delete, empty strings are ignored
-- * @return A vector of file names registered for deletion
-- */
--std::vector< std::string >& registerFileToDelete( std::string fname = "" );
--
--inline
--std::vector< std::string >& registerFileToDelete( std::string fname ) {
--	// since this vector is needed when atexit() is called we allocate it
--	// on the heap so its destructor won't get called
--	static std::vector< std::string >* files = new std::vector< std::string >();
--#pragma omp critical
--{
--	if( fname != "" )
--		files->push_back( fname );
--}
--	return *files;
--}
-+/**
-+ * Register a file name to be deleted before the process exits
-+ * When passed an empty string, it does not add to the list of files to delete
-+ * @param fname	The name of a file to delete, empty strings are ignored
-+ * @return A vector of file names registered for deletion
-+ */
-+std::vector< std::string >& registerFileToDelete( std::string fname = "" );
- 
--void deleteRegisteredFiles();
--inline
--void deleteRegisteredFiles() {
--	// don't be a slob, clean up after yourself:
--	// delete any files that are laying around
--	std::vector< std::string >& del_files = registerFileToDelete();
--	for( int fileI = 0; fileI < del_files.size(); fileI++ )
--		boost::filesystem::remove( del_files[ fileI ] );
--	del_files.clear();	// clear the deleted files from the list
--}
-+inline
-+std::vector< std::string >& registerFileToDelete( std::string fname ) {
-+	// since this vector is needed when atexit() is called we allocate it
-+	// on the heap so its destructor won't get called
-+	static std::vector< std::string >* files = new std::vector< std::string >();
-+#pragma omp critical
-+{
-+	if( fname != "" )
-+		files->push_back( fname );
-+}
-+	return *files;
-+}
-+
-+void deleteRegisteredFiles();
-+inline
-+void deleteRegisteredFiles() {
-+	// don't be a slob, clean up after yourself:
-+	// delete any files that are laying around
-+	std::vector< std::string >& del_files = registerFileToDelete();
-+	for( int fileI = 0; fileI < del_files.size(); fileI++ )
-+		boost::filesystem::remove( del_files[ fileI ] );
-+	del_files.clear();	// clear the deleted files from the list
-+}
- 
- 
- /**
-@@ -80,7 +80,7 @@ std::string CreateTempFileName(const std::string& prefix)
- #endif
-         boost::filesystem::path path( prefix );
-         dir = path.branch_path().string();
--        name = path.leaf();
-+        name = path.filename().string();
-         if( name == "/" )
-         {
-                 dir += name;
-diff --git a/libMems/ProgressiveAligner.cpp b/libMems/ProgressiveAligner.cpp
-index 3be5fe0..5667a9e 100644
---- a/libMems/ProgressiveAligner.cpp
-+++ b/libMems/ProgressiveAligner.cpp
-@@ -27,7 +27,7 @@
- 
- #include <boost/dynamic_bitset.hpp>
- #include <boost/tuple/tuple.hpp>
--#include <boost/property_map.hpp>
-+#include <boost/property_map/property_map.hpp>
- #include <boost/graph/graph_traits.hpp>
- #include <boost/graph/adjacency_list.hpp>
- #include <boost/graph/johnson_all_pairs_shortest.hpp>