1 files changed, 137 insertions, 0 deletions
diff --git a/sci-libs/shogun/shogun-3.2.0.ebuild b/sci-libs/shogun/shogun-3.2.0.ebuild
new file mode 100644
index 000000000000..51cfb508525e
--- /dev/null
+++ b/sci-libs/shogun/shogun-3.2.0.ebuild
@@ -0,0 +1,137 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+PYTHON_COMPAT=( python2_7 python3_{3,4} )
+
+inherit cmake-utils multilib python-single-r1 toolchain-funcs versionator
+
+MYPV=$(get_version_component_range 1-2)
+MYPD=${PN}-data-0.8
+
+DESCRIPTION="Large Scale Machine Learning Toolbox"
+HOMEPAGE="http://shogun-toolbox.org/"
+SRC_URI="
+	ftp://shogun-toolbox.org/shogun/releases/${MYPV}/sources/${P}.tar.bz2
+	test? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )
+	examples? ( ftp://shogun-toolbox.org/shogun/data/${MYPD}.tar.bz2 )"
+
+LICENSE="GPL-3 free-noncomm"
+SLOT="0/16"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="doc examples lua mono octave python R ruby static-libs test"
+
+REQUIRED_USE="
+	python? ( ${PYTHON_REQUIRED_USE} )
+	test? ( python )
+	"
+
+RDEPEND="
+	app-arch/bzip2:=
+	app-arch/gzip:=
+	app-arch/lzma:=
+	app-arch/snappy:=
+	dev-libs/lzo:=
+	>=dev-cpp/eigen-3.1
+	dev-libs/json-c:=
+	dev-libs/libxml2:=
+	dev-libs/protobuf:=
+	net-misc/curl:=
+	sci-libs/arpack:=
+	sci-libs/arprec:=
+	sci-libs/colpack:=
+	sci-libs/hdf5:=
+	sci-libs/nlopt:=
+	sci-mathematics/glpk:=
+	sci-mathematics/lpsolve:=
+	sys-libs/readline
+	sys-libs/zlib:=
+	virtual/blas
+	virtual/cblas
+	virtual/lapack
+	lua? ( dev-lang/lua )
+	mono? ( dev-lang/mono )
+	octave? ( sci-mathematics/octave[hdf5] )
+	python? ( dev-python/numpy[${PYTHON_USEDEP}] )
+	R? ( dev-lang/R )
+	ruby? ( dev-ruby/narray )"
+
+DEPEND="${RDEPEND}
+	virtual/pkgconfig
+	doc? ( app-doc/doxygen[dot] )
+	lua? ( >=dev-lang/swig-2.0.4 )
+	mono? ( >=dev-lang/swig-2.0.4 )
+	octave? ( >=dev-lang/swig-2.0.4 )
+	python? ( >=dev-lang/swig-2.0.4 test? ( sci-libs/scipy ) )
+	R? ( >=dev-lang/swig-2.0.4 )
+	ruby? ( >=dev-lang/swig-2.0.4 )
+	test? (
+		dev-python/jinja[${PYTHON_USEDEP}]
+		dev-cpp/gmock
+		)"
+
+# javamodular needs jblas (painful to package properly)
+# permodular work in progress (as 3.2.0)
+# could actually support multiple pythons, multiple rubys
+# feel free to do work for it
+
+PATCHES=(
+	"${FILESDIR}"/${P}-atlas.patch
+)
+
+pkg_setup() {
+	use python && python-single-r1_pkg_setup
+}
+
+src_configure() {
+	export ATLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas lapack)"
+	export CBLAS_LIBRARY="$($(tc-getPKG_CONFIG) --libs cblas)"
+	export ATLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas cblas lapack)"
+	export LAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs lapack)"
+	local mycmakeargs=(
+		-DBUILD_EXAMPLES=OFF
+		-DBUNDLE_ARPREC=OFF
+		-DBUNDLE_COLPACK=OFF
+		-DBUNDLE_EIGEN=OFF
+		-DBUNDLE_JSON=OFF
+		-DBUNDLE_NLOPT=OFF
+		-DENABLE_COVERAGE=OFF
+		-DJavaModular=OFF
+		-DPerlModular=OFF
+		-DLIB_INSTALL_DIR=$(get_libdir)
+		$(cmake-utils_use lua LuaModular)
+		$(cmake-utils_use mono CSharpModular)
+		$(cmake-utils_use octave OctaveModular)
+		$(cmake-utils_use octave OctaveStatic)
+		$(cmake-utils_use python PythonModular)
+		$(cmake-utils_use python PythonStatic)
+		$(cmake-utils_use R RModular)
+		$(cmake-utils_use R RStatic)
+		$(cmake-utils_use ruby RubyModular)
+		$(cmake-utils_use test ENABLE_TESTING)
+	)
+	cmake-utils_src_configure
+	# gentoo bug #302621
+	has_version sci-libs/hdf5[mpi] && export CXX=mpicxx CC=mpicc
+}
+
+src_compile() {
+	cmake-utils_src_compile
+	use doc && emake -C doc
+}
+
+src_install() {
+	cmake-utils_src_install
+	use doc && dohtml -r doc/html/*
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		emake -C examples clean
+		doins -r examples
+		docompress -x /usr/share/doc/${PF}/examples
+		insinto /usr/share/doc/${PF}/data
+		doins -r "${WORKDIR}"/${MYPD}/*
+
+	fi
+}