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-rw-r--r--sci-libs/spqr/Manifest2
-rw-r--r--sci-libs/spqr/files/spqr-1.2.3-autotools.patch203
-rw-r--r--sci-libs/spqr/metadata.xml4
-rw-r--r--sci-libs/spqr/spqr-1.2.3-r1.ebuild39
-rw-r--r--sci-libs/spqr/spqr-1.3.1.ebuild31
5 files changed, 1 insertions, 278 deletions
diff --git a/sci-libs/spqr/Manifest b/sci-libs/spqr/Manifest
index 0e91983a9460..2463ac3152e2 100644
--- a/sci-libs/spqr/Manifest
+++ b/sci-libs/spqr/Manifest
@@ -1,3 +1 @@
-DIST SPQR-1.2.3.tar.gz 1090017 BLAKE2B 7ecd180f2147229bea7d9230c5f645c1d835e7260d58930ab8021c7d90b3b7992d708af942beaa728bce86e83e008db9ecb7d69cb7a3b1245bab1c9c9bf7c4c6 SHA512 1abcde88e157bc99445e3589cacd6aba875429f1cdef87e36e1d6943c1474a2f8df9a65eff99e92d72e346c02f11194b6ec6829c158f42f689f95845c9b11599
-DIST spqr-1.3.1.tar.bz2 1115795 BLAKE2B 027509745cd336d3ccff27a4f36e51493fb9008fabb84448ba559b561269861be97d86ec841674c2bc944eb86623675b223947fcccf0716052a899ce17850d32 SHA512 1c7644da2bb7a14b9bc26066b84355626ce5d7c396afe5ce496ae72a5ef54431dc817178bfe7dd69ddf586b661c44066ee0850c91dba846a32787d52607749bf
DIST spqr-2.0.9.tar.bz2 2161068 BLAKE2B a662983d2543a65ce36a367749db5585308acb56b016f69a35c46a84e9c12a678f57a3cfd459cc2e887fff2819b00f99981efaadb73831f1b4c54cbef5e1c367 SHA512 54b203e0d68b266473b8a2b7b3b3a55476df54a3ebd5748b70faa7bad1d0a5a7387197f0674ba5f9a5d45887daa736117f8d6ffbbc2eb02482b3374a3babf721
diff --git a/sci-libs/spqr/files/spqr-1.2.3-autotools.patch b/sci-libs/spqr/files/spqr-1.2.3-autotools.patch
deleted file mode 100644
index be5d15f188c3..000000000000
--- a/sci-libs/spqr/files/spqr-1.2.3-autotools.patch
+++ /dev/null
@@ -1,203 +0,0 @@
---- Demo/Makefile.am 1969-12-31 19:00:00.000000000 -0500
-+++ Demo/Makefile.am 2009-10-22 23:42:08.000000000 -0400
-@@ -0,0 +1,78 @@
-+AM_CPPFLAGS = -I$(top_srcdir)/Include
-+
-+LDADD = $(top_builddir)/Source/libspqr.la \
-+ $(CHOLMOD_LIBS) $(AMD_LIBS) $(CAMD_LIBS) \
-+ $(COLAMD_LIBS) $(CCOLAMD_LIBS) \
-+ $(METIS_LIBS) $(BLAS_LIBS) $(LAPACK_LIBS) $(TBB_LIBS)
-+
-+check_PROGRAMS = \
-+ qrsimple qrsimplec \
-+ qrdemo qrdemoc
-+
-+qrsimple_SOURCES = qrsimple.cpp
-+qrsimplec = qrsimplec.c
-+qrsimplec_CFLAGS = -ansi
-+qrdemo_SOURCES = qrdemo.cpp
-+qrdemoc_SOURCES = qrdemoc.c
-+qrdemoc_CFLAGS = -ansi
-+
-+
-+check-local: $(check_PROGRAMS)
-+ ./qrsimple < $(top_srcdir)/Matrix/ash219.mtx || exit 1
-+ ./qrsimplec < $(top_srcdir)/Matrix/ash219.mtx || exit 1
-+ ./qrsimple < $(top_srcdir)/Matrix/west0067.mtx || exit 1
-+ ./qrsimplec < $(top_srcdir)/Matrix/west0067.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/a2.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/r2.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/a04.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/a2.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/west0067.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/c2.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/a0.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/lfat5b.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/bfwa62.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/LFAT5.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/b1_ss.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/bcspwr01.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/lpi_galenet.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/lpi_itest6.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/ash219.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/a4.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/s32.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/c32.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/lp_share1b.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/a1.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/GD06_theory.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/GD01_b.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/Tina_AskCal.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/GD98_a.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/Ragusa16.mtx || exit 1
-+ ./qrdemo < $(top_srcdir)/Matrix/young1c.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/a2.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/r2.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/a04.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/a2.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/west0067.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/c2.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/a0.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/lfat5b.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/bfwa62.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/LFAT5.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/b1_ss.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/bcspwr01.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/lpi_galenet.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/lpi_itest6.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/ash219.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/a4.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/s32.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/c32.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/lp_share1b.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/a1.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/GD06_theory.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/GD01_b.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal_perm.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/Tina_AskCal.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/GD98_a.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/Ragusa16.mtx || exit 1
-+ ./qrdemoc < $(top_srcdir)/Matrix/young1c.mtx || exit 1
---- Include/Makefile.am 1969-12-31 19:00:00.000000000 -0500
-+++ Include/Makefile.am 2009-10-22 23:42:08.000000000 -0400
-@@ -0,0 +1,5 @@
-+include_HEADERS = \
-+ spqr.hpp \
-+ SuiteSparseQR_C.h \
-+ SuiteSparseQR_definitions.h \
-+ SuiteSparseQR.hpp
---- Makefile.am 1969-12-31 19:00:00.000000000 -0500
-+++ Makefile.am 2009-10-22 23:42:08.000000000 -0400
-@@ -0,0 +1,2 @@
-+SUBDIRS = Include Source Demo
-+EXTRA_DIST = README.txt
---- Source/Makefile.am 1969-12-31 19:00:00.000000000 -0500
-+++ Source/Makefile.am 2009-10-22 23:43:03.000000000 -0400
-@@ -0,0 +1,48 @@
-+AM_CPPFLAGS=-I$(top_srcdir)/Include
-+
-+lib_LTLIBRARIES = libspqr.la
-+
-+libspqr_la_SOURCES = \
-+ spqr_rmap.cpp \
-+ SuiteSparseQR_C.cpp \
-+ SuiteSparseQR_expert.cpp \
-+ spqr_parallel.cpp \
-+ spqr_kernel.cpp \
-+ spqr_analyze.cpp \
-+ spqr_assemble.cpp \
-+ spqr_cpack.cpp \
-+ spqr_csize.cpp \
-+ spqr_fcsize.cpp \
-+ spqr_debug.cpp \
-+ spqr_front.cpp \
-+ spqr_factorize.cpp \
-+ spqr_freenum.cpp \
-+ spqr_freesym.cpp \
-+ spqr_freefac.cpp \
-+ spqr_fsize.cpp \
-+ spqr_maxcolnorm.cpp \
-+ spqr_rconvert.cpp \
-+ spqr_rcount.cpp \
-+ spqr_rhpack.cpp \
-+ spqr_rsolve.cpp \
-+ spqr_stranspose1.cpp \
-+ spqr_stranspose2.cpp \
-+ spqr_hpinv.cpp \
-+ spqr_1fixed.cpp \
-+ spqr_1colamd.cpp \
-+ SuiteSparseQR.cpp \
-+ spqr_1factor.cpp \
-+ spqr_cumsum.cpp \
-+ spqr_shift.cpp \
-+ spqr_happly.cpp \
-+ spqr_panel.cpp \
-+ spqr_happly_work.cpp \
-+ SuiteSparseQR_qmult.cpp \
-+ spqr_trapezoidal.cpp \
-+ spqr_larftb.cpp \
-+ spqr_append.cpp \
-+ spqr_type.cpp \
-+ spqr_tol.cpp
-+
-+libspqr_la_CPPFLAGS = $(AM_CPPFLAGS) $(METIS_CFLAGS) $(TBB_CFLAGS) $(LAPACK_CFLAGS)
-+libspqr_la_LIBADD = $(METIS_LIBS) $(TBB_LIBS) $(LAPACK_LIBS)
---- configure.ac 1969-12-31 19:00:00.000000000 -0500
-+++ configure.ac 2009-10-22 23:42:32.000000000 -0400
-@@ -0,0 +1,55 @@
-+AC_PREREQ(2.59)
-+AC_INIT(spqr, 1.2, davis@cise.ufl.edu)
-+AM_INIT_AUTOMAKE([foreign])
-+AC_CONFIG_SRCDIR([Source/spqr_kernel.cpp])
-+AM_INIT_AUTOMAKE([foreign])
-+
-+AC_PROG_LIBTOOL
-+AC_PROG_CXX
-+AC_LANG(C++)
-+
-+AC_CHECK_LIB(m, sqrt)
-+AC_CHECK_LIB(lapack,zlarft_)
-+AC_CHECK_HEADERS(UFconfig.h)
-+AC_CHECK_HEADERS(cholmod.h)
-+AC_CHECK_LIB(cholmod, cholmod_solve, [], \
-+ [AC_MSG_ERROR([Cannot find libcholmod])])
-+
-+AC_ARG_WITH(metis,
-+ [AC_HELP_STRING([--with-metis],
-+ [Use METIS for partitioning])],
-+ [with_metis=$withval],
-+ [with_metis="yes"])
-+if test x$with_metis = xyes; then
-+ PKG_PROG_PKG_CONFIG
-+ if test -n "$PKG_CONFIG"; then
-+ PKG_CHECK_MODULES([metis], [metis])
-+ else
-+ AC_CHECK_HEADERS(metis.h)
-+ AC_CHECK_LIB(metis, METIS_NodeND, [METIS_LIBS=-lmetis], \
-+ [AC_MSG_ERROR([Cannot find libmetis])])
-+ fi
-+ AC_DEFINE(NPARTITION)
-+fi
-+AM_CONDITIONAL([METIS], [test x$with_metis = xyes])
-+
-+AC_ARG_WITH(tbb,
-+ [AC_HELP_STRING([--with-tbb],
-+ [Use Intel Threading Building Block for multithreading])],
-+ [with_tbb=$withval],
-+ [with_tbb="yes"])
-+if test x$with_tbb = xyes; then
-+ AC_CHECK_HEADERS(tbb/task.h)
-+ TBB_CFLAGS=""
-+ TBB_LIBS="-ltbb"
-+ AC_SUBST(TBB_CFLAGS)
-+ AC_SUBST(TBB_LIBS)
-+ AC_DEFINE(HAVE_TBB)
-+fi
-+AM_CONDITIONAL([WITH_TBB], [test x$with_tbb = xyes])
-+
-+AC_CONFIG_FILES([Makefile
-+ Source/Makefile
-+ Include/Makefile
-+ Demo/Makefile])
-+AC_OUTPUT
diff --git a/sci-libs/spqr/metadata.xml b/sci-libs/spqr/metadata.xml
index 0d8618db4112..080353cff1a4 100644
--- a/sci-libs/spqr/metadata.xml
+++ b/sci-libs/spqr/metadata.xml
@@ -13,10 +13,8 @@
peak performance of a multicore computer.
</longdescription>
<use>
- <flag name="metis">Use <pkg>sci-libs/metis</pkg> or <pkg>sci-libs/parmetis</pkg> for partitioning</flag>
<flag name="partition">
- Use the partition module of <pkg>sci-libs/cholmod</pkg> for
- partitioning
+ Use the partition module of <pkg>sci-libs/cholmod</pkg> for partitioning
</flag>
<flag name="tbb">Enable multithreading with the Intel Threads
Building Block <pkg>dev-cpp/tbb</pkg></flag>
diff --git a/sci-libs/spqr/spqr-1.2.3-r1.ebuild b/sci-libs/spqr/spqr-1.2.3-r1.ebuild
deleted file mode 100644
index 9f722944c3d0..000000000000
--- a/sci-libs/spqr/spqr-1.2.3-r1.ebuild
+++ /dev/null
@@ -1,39 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-AUTOTOOLS_AUTORECONF=yes
-inherit autotools-utils
-
-MY_PN=SPQR
-DESCRIPTION="Multithreaded multifrontal sparse QR factorization library"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/SPQR"
-SRC_URI="http://www.cise.ufl.edu/research/sparse/${MY_PN}/${MY_PN}-${PV}.tar.gz"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="amd64 ~x86"
-IUSE="doc metis static-libs tbb"
-RDEPEND="sci-libs/cholmod[supernodal(+)]
- tbb? ( dev-cpp/tbb )
- metis? ( >=sci-libs/cholmod-1.7.0-r1[metis] )"
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-DOCS=( README.txt Doc/ChangeLog )
-PATCHES=( "${FILESDIR}"/${P}-autotools.patch )
-
-S="${WORKDIR}/${MY_PN}"
-
-src_configure() {
- myeconfargs+=(
- $(use_with metis)
- $(use_with tbb)
- )
- autotools-utils_src_configure
-}
-
-src_install() {
- autotools-utils_src_install
- use doc && doins Doc/*.pdf
-}
diff --git a/sci-libs/spqr/spqr-1.3.1.ebuild b/sci-libs/spqr/spqr-1.3.1.ebuild
deleted file mode 100644
index a22737b28bfa..000000000000
--- a/sci-libs/spqr/spqr-1.3.1.ebuild
+++ /dev/null
@@ -1,31 +0,0 @@
-# Copyright 1999-2020 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit autotools-utils
-
-DESCRIPTION="Multithreaded multifrontal sparse QR factorization library"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/SPQR"
-SRC_URI="https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.bz2"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS="~amd64 ~arm ~hppa ~ppc ~ppc64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="doc metis static-libs tbb"
-RDEPEND="
- virtual/lapack
- >=sci-libs/cholmod-2[metis?]
- tbb? ( dev-cpp/tbb )"
-DEPEND="${RDEPEND}
- virtual/pkgconfig
- doc? ( virtual/latex-base )"
-
-src_configure() {
- local myeconfargs+=(
- $(use_with doc)
- $(use_with metis partition)
- $(use_with tbb)
- )
- autotools-utils_src_configure
-}