diff options
Diffstat (limited to 'sci-libs/superlu/files')
| -rw-r--r-- | sci-libs/superlu/files/superlu-4.3-autotools.patch | 584 | ||||
| -rw-r--r-- | sci-libs/superlu/files/superlu-4.3-format-security.patch | 16 |
2 files changed, 600 insertions, 0 deletions
diff --git a/sci-libs/superlu/files/superlu-4.3-autotools.patch b/sci-libs/superlu/files/superlu-4.3-autotools.patch new file mode 100644 index 000000000000..c5aae0159344 --- /dev/null +++ b/sci-libs/superlu/files/superlu-4.3-autotools.patch @@ -0,0 +1,584 @@ + EXAMPLE/Makefile | 68 +++++++++--------- + FORTRAN/Makefile | 14 ++-- + Makefile.am | 4 + + SRC/Makefile.am | 110 +++++++++++++++++++++++++++++ + ax_blas.m4 | 201 ++++++++++++++++++++++++++++++++++++++++++++++++++++++ + configure.ac | 16 ++++ + superlu.pc.in | 13 ++++ + 7 files changed, 385 insertions(+), 41 deletions(-) + +diff --git a/EXAMPLE/Makefile b/EXAMPLE/Makefile +index c286ded..37950dc 100644 +--- a/EXAMPLE/Makefile ++++ b/EXAMPLE/Makefile +@@ -1,4 +1,3 @@ +-include ../make.inc + + ####################################################################### + # This makefile creates the example programs for the linear equation +@@ -32,7 +31,9 @@ include ../make.inc + # + ####################################################################### + +-HEADER = ../SRC ++HEADER = $(shell pkg-config --cflags superlu) ++LIBS = $(shell pkg-config --libs superlu) ++CDEFS = -DAdd_ + + SLINEXM = slinsol.o + SLINEXM1 = slinsol1.o +@@ -67,7 +68,6 @@ ZLINXEXM2 = zlinsolx2.o + ZITSOL = zitersol.o zfgmr.o + ZITSOL1 = zitersol1.o zfgmr.o + +- + all: single double complex complex16 + + single: slinsol slinsol1 slinsolx slinsolx1 slinsolx2 sitersol sitersol1 +@@ -77,97 +77,97 @@ complex: clinsol clinsol1 clinsolx clinsolx1 clinsolx2 citersol citersol1 + complex16: zlinsol zlinsol1 zlinsolx zlinsolx1 zlinsolx2 zitersol zitersol1 + + slinsol: $(SLINEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SLINEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SLINEXM) $(LIBS) -o $@ + + slinsol1: $(SLINEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SLINEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SLINEXM1) $(LIBS) -o $@ + + slinsolx: $(SLINXEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SLINXEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SLINXEXM) $(LIBS) -o $@ + + slinsolx1: $(SLINXEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SLINXEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SLINXEXM1) $(LIBS) -o $@ + + slinsolx2: $(SLINXEXM2) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SLINXEXM2) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SLINXEXM2) $(LIBS) -o $@ + + sitersol: $(SITSOL) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SITSOL) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SITSOL) $(LIBS) -o $@ + + sitersol1: $(SITSOL1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SITSOL1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SITSOL1) $(LIBS) -o $@ + + dlinsol: $(DLINEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DLINEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DLINEXM) $(LIBS) -o $@ + + dlinsol1: $(DLINEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DLINEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DLINEXM1) $(LIBS) -o $@ + + dlinsolx: $(DLINXEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DLINXEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DLINXEXM) $(LIBS) -o $@ + + dlinsolx1: $(DLINXEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DLINXEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DLINXEXM1) $(LIBS) -o $@ + + dlinsolx2: $(DLINXEXM2) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DLINXEXM2) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DLINXEXM2) $(LIBS) -o $@ + + superlu: $(SUPERLUEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(SUPERLUEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(SUPERLUEXM) $(LIBS) -o $@ + + ditersol: $(DITSOL) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DITSOL) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DITSOL) $(LIBS) -o $@ + + ditersol1: $(DITSOL1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(DITSOL1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(DITSOL1) $(LIBS) -o $@ + + clinsol: $(CLINEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CLINEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CLINEXM) $(LIBS) -o $@ + + clinsol1: $(CLINEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CLINEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CLINEXM1) $(LIBS) -o $@ + + clinsolx: $(CLINXEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CLINXEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CLINXEXM) $(LIBS) -o $@ + + clinsolx1: $(CLINXEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CLINXEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CLINXEXM1) $(LIBS) -o $@ + + clinsolx2: $(CLINXEXM2) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CLINXEXM2) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CLINXEXM2) $(LIBS) -o $@ + + citersol: $(CITSOL) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CITSOL) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CITSOL) $(LIBS) -o $@ + + citersol1: $(CITSOL1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(CITSOL1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(CITSOL1) $(LIBS) -o $@ + + zlinsol: $(ZLINEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZLINEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(ZLINEXM) $(LIBS) -o $@ + + zlinsol1: $(ZLINEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZLINEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(ZLINEXM1) $(LIBS) -o $@ + + zlinsolx: $(ZLINXEXM) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZLINXEXM) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(ZLINXEXM) $(LIBS) -o $@ + + zlinsolx1: $(ZLINXEXM1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZLINXEXM1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(ZLINXEXM1) $(LIBS) -o $@ + + zlinsolx2: $(ZLINXEXM2) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZLINXEXM2) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(ZLINXEXM2) $(LIBS) -o $@ + + zitersol: $(ZITSOL) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZITSOL) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAGS) $(ZITSOL) $(LIBS) -o $@ + + zitersol1: $(ZITSOL1) $(SUPERLULIB) +- $(LOADER) $(LOADOPTS) $(ZITSOL1) $(LIBS) -lm -o $@ ++ $(LD) $(LDFLAG) $(ZITSOL1) $(LIBS) -o $@ + + .c.o: +- $(CC) $(CFLAGS) $(CDEFS) -I$(HEADER) -c $< $(VERBOSE) ++ $(CC) $(CFLAGS) $(CDEFS) $(HEADER) -c $< $(VERBOSE) + + .f.o: +- $(FORTRAN) $(FFLAGS) -c $< $(VERBOSE) ++ $(FC) $(FFLAGS) -c $< $(VERBOSE) + + clean: + rm -f *.o *linsol *linsol1 *linsolx *linsolx1 *linsolx2 \ +diff --git a/FORTRAN/Makefile b/FORTRAN/Makefile +index 23671a7..54da751 100644 +--- a/FORTRAN/Makefile ++++ b/FORTRAN/Makefile +@@ -1,12 +1,12 @@ +-include ../make.inc ++#include ../make.inc + + ####################################################################### + # This makefile creates the Fortran example interface to use the + # C routines in SuperLU. + ####################################################################### + +-HEADER = ../SRC +-LIBS = $(SUPERLULIB) $(BLASLIB) -lm ++HEADER = $(shell pkg-config --cflags superlu) ++LIBS = $(shell pkg-config --libs superlu) + + # double real + F77EXM = f77_main.o hbcode1.o c_fortran_dgssv.o +@@ -17,19 +17,19 @@ ZF77EXM = z_f77_main.o zhbcode1.o c_fortran_zgssv.o + all: f77exm zf77exm + + f77exm: $(F77EXM) $(SUPERLULIB) +- $(FORTRAN) $(LOADOPTS) $(F77EXM) $(LIBS) -o $@ ++ $(FC) $(LDFLAGS) $(F77EXM) $(LIBS) -o $@ + + zf77exm: $(ZF77EXM) $(SUPERLULIB) + $(FORTRAN) $(LOADOPTS) $(ZF77EXM) $(LIBS) -o $@ + + c_fortran_zgssv.o: c_fortran_zgssv.c +- $(CC) $(CFLAGS) $(CDEFS) -I$(HEADER) -c $< $(VERBOSE) ++ $(CC) $(CFLAGS) $(CDEFS) $(HEADER) -c $< $(VERBOSE) + + .c.o: +- $(CC) $(CFLAGS) $(CDEFS) -I$(HEADER) -c $< $(VERBOSE) ++ $(CC) $(CFLAGS) $(CDEFS) $(HEADER) -c $< $(VERBOSE) + + .f.o: +- $(FORTRAN) $(FFLAGS) -c $< $(VERBOSE) ++ $(FC) $(FFLAGS) -c $< $(VERBOSE) + + clean: + rm -f *.o f77exm zf77exm +diff --git a/Makefile.am b/Makefile.am +new file mode 100644 +index 0000000..7e51046 +--- /dev/null ++++ b/Makefile.am +@@ -0,0 +1,4 @@ ++SUBDIRS = SRC ++ ++pkgconfigdir = $(libdir)/pkgconfig ++pkgconfig_DATA = superlu.pc +diff --git a/SRC/Makefile.am b/SRC/Makefile.am +new file mode 100644 +index 0000000..748e5e9 +--- /dev/null ++++ b/SRC/Makefile.am +@@ -0,0 +1,110 @@ ++AM_CPPFLAGS = -DAdd_ ++ ++### headers ++noinst_HEADERS = \ ++ colamd.h \ ++ html_mainpage.h ++ ++src_includedir = $(includedir)/superlu ++src_include_HEADERS = \ ++ slu_cdefs.h \ ++ slu_ddefs.h \ ++ slu_sdefs.h \ ++ slu_zdefs.h \ ++ slu_Cnames.h \ ++ slu_dcomplex.h \ ++ slu_scomplex.h \ ++ slu_util.h \ ++ superlu_enum_consts.h \ ++ supermatrix.h ++ ++### LAPACK ++LAAUX = lsame.c xerbla.c ++SLASRC = slacon.c ++DLASRC = dlacon.c ++CLASRC = clacon.c scsum1.c icmax1.c ++ZLASRC = zlacon.c dzsum1.c izmax1.c ++ ++ ++################################## ++# Do not optimize these routines # ++################################## ++CFLAGS_SAV=@CFLAGS@ ++CFLAGS= ++noinst_LTLIBRARIES = libnoopt.la ++libnoopt_la_SOURCES = slamch.c dlamch.c superlu_timer.c ++libnoopt_la_CFLAGS = -O0 ++ ++### SuperLU ++ALLAUX = util.c memory.c get_perm_c.c mmd.c \ ++ sp_coletree.c sp_preorder.c sp_ienv.c relax_snode.c \ ++ heap_relax_snode.c colamd.c \ ++ ilu_relax_snode.c ilu_heap_relax_snode.c mark_relax.c \ ++ mc64ad.f qselect.f ++ ++SLUSRC = \ ++ sgssv.c sgssvx.c \ ++ ssp_blas2.c ssp_blas3.c sgscon.c \ ++ slangs.c sgsequ.c slaqgs.c spivotgrowth.c \ ++ sgsrfs.c sgstrf.c sgstrs.c scopy_to_ucol.c \ ++ ssnode_dfs.c ssnode_bmod.c \ ++ spanel_dfs.c spanel_bmod.c sreadhb.c \ ++ scolumn_dfs.c scolumn_bmod.c spivotL.c spruneL.c \ ++ smemory.c sutil.c smyblas2.c \ ++ sgsisx.c sgsitrf.c sldperm.c \ ++ ilu_sdrop_row.c ilu_ssnode_dfs.c \ ++ ilu_scolumn_dfs.c ilu_spanel_dfs.c ilu_scopy_to_ucol.c \ ++ ilu_spivotL.c sdiagonal.c ++ ++DLUSRC = \ ++ dgssv.c dgssvx.c \ ++ dsp_blas2.c dsp_blas3.c dgscon.c \ ++ dlangs.c dgsequ.c dlaqgs.c dpivotgrowth.c \ ++ dgsrfs.c dgstrf.c dgstrs.c dcopy_to_ucol.c \ ++ dsnode_dfs.c dsnode_bmod.c \ ++ dpanel_dfs.c dpanel_bmod.c dreadhb.c \ ++ dcolumn_dfs.c dcolumn_bmod.c dpivotL.c dpruneL.c \ ++ dmemory.c dutil.c dmyblas2.c \ ++ dgsisx.c dgsitrf.c \ ++ dldperm.c \ ++ ilu_ddrop_row.c ilu_dsnode_dfs.c \ ++ ilu_dcolumn_dfs.c ilu_dpanel_dfs.c ilu_dcopy_to_ucol.c \ ++ ilu_dpivotL.c ddiagonal.c ++ ++CLUSRC = \ ++ scomplex.c cgssv.c cgssvx.c csp_blas2.c csp_blas3.c cgscon.c \ ++ clangs.c cgsequ.c claqgs.c cpivotgrowth.c \ ++ cgsrfs.c cgstrf.c cgstrs.c ccopy_to_ucol.c \ ++ csnode_dfs.c csnode_bmod.c \ ++ cpanel_dfs.c cpanel_bmod.c creadhb.c \ ++ ccolumn_dfs.c ccolumn_bmod.c cpivotL.c cpruneL.c \ ++ cmemory.c cutil.c cmyblas2.c \ ++ cgsisx.c cgsitrf.c cldperm.c \ ++ ilu_cdrop_row.c ilu_csnode_dfs.c \ ++ ilu_ccolumn_dfs.c ilu_cpanel_dfs.c ilu_ccopy_to_ucol.c \ ++ ilu_cpivotL.c cdiagonal.c ++ ++ZLUSRC = \ ++ dcomplex.c zgssv.c zgssvx.c zsp_blas2.c zsp_blas3.c zgscon.c \ ++ zlangs.c zgsequ.c zlaqgs.c zpivotgrowth.c \ ++ zgsrfs.c zgstrf.c zgstrs.c zcopy_to_ucol.c \ ++ zsnode_dfs.c zsnode_bmod.c \ ++ zpanel_dfs.c zpanel_bmod.c zreadhb.c \ ++ zcolumn_dfs.c zcolumn_bmod.c zpivotL.c zpruneL.c \ ++ zmemory.c zutil.c zmyblas2.c \ ++ zgsisx.c zgsitrf.c zldperm.c \ ++ ilu_zdrop_row.c ilu_zsnode_dfs.c \ ++ ilu_zcolumn_dfs.c ilu_zpanel_dfs.c ilu_zcopy_to_ucol.c \ ++ ilu_zpivotL.c zdiagonal.c ++ ++lib_LTLIBRARIES = libsuperlu.la ++libsuperlu_la_SOURCES = \ ++ $(NOOPTAUX) \ ++ $(ALLAUX) $(LAAUX) \ ++ $(SLUSRC) $(SLASRC) \ ++ $(DLUSRC) $(DLASRC) \ ++ $(CLUSRC) $(CLASRC) \ ++ $(ZLUSRC) $(ZLASRC) ++libsuperlu_la_CFLAGS = $(CFLAGS_SAV) ++libsuperlu_la_LIBADD = $(BLAS_LIBS) libnoopt.la ++libsuperlu_la_LDFLAGS = -no-undefined -version-info 4:2:0 +diff --git a/ax_blas.m4 b/ax_blas.m4 +new file mode 100644 +index 0000000..e4f96cb +--- /dev/null ++++ b/ax_blas.m4 +@@ -0,0 +1,201 @@ ++# =========================================================================== ++# http://www.gnu.org/software/autoconf-archive/ax_blas.html ++# =========================================================================== ++# ++# SYNOPSIS ++# ++# AX_BLAS([ACTION-IF-FOUND[, ACTION-IF-NOT-FOUND]]) ++# ++# DESCRIPTION ++# ++# This macro looks for a library that implements the BLAS linear-algebra ++# interface (see http://www.netlib.org/blas/). On success, it sets the ++# BLAS_LIBS output variable to hold the requisite library linkages. ++# ++# To link with BLAS, you should link with: ++# ++# $BLAS_LIBS $LIBS $FLIBS ++# ++# in that order. FLIBS is the output variable of the ++# AC_F77_LIBRARY_LDFLAGS macro (called if necessary by AX_BLAS), and is ++# sometimes necessary in order to link with F77 libraries. Users will also ++# need to use AC_F77_DUMMY_MAIN (see the autoconf manual), for the same ++# reason. ++# ++# Many libraries are searched for, from ATLAS to CXML to ESSL. The user ++# may also use --with-blas=<lib> in order to use some specific BLAS ++# library <lib>. In order to link successfully, however, be aware that you ++# will probably need to use the same Fortran compiler (which can be set ++# via the F77 env. var.) as was used to compile the BLAS library. ++# ++# ACTION-IF-FOUND is a list of shell commands to run if a BLAS library is ++# found, and ACTION-IF-NOT-FOUND is a list of commands to run it if it is ++# not found. If ACTION-IF-FOUND is not specified, the default action will ++# define HAVE_BLAS. ++# ++# LICENSE ++# ++# Copyright (c) 2008 Steven G. Johnson <stevenj@alum.mit.edu> ++# ++# This program is free software: you can redistribute it and/or modify it ++# under the terms of the GNU General Public License as published by the ++# Free Software Foundation, either version 3 of the License, or (at your ++# option) any later version. ++# ++# This program is distributed in the hope that it will be useful, but ++# WITHOUT ANY WARRANTY; without even the implied warranty of ++# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General ++# Public License for more details. ++# ++# You should have received a copy of the GNU General Public License along ++# with this program. If not, see <http://www.gnu.org/licenses/>. ++# ++# As a special exception, the respective Autoconf Macro's copyright owner ++# gives unlimited permission to copy, distribute and modify the configure ++# scripts that are the output of Autoconf when processing the Macro. You ++# need not follow the terms of the GNU General Public License when using ++# or distributing such scripts, even though portions of the text of the ++# Macro appear in them. The GNU General Public License (GPL) does govern ++# all other use of the material that constitutes the Autoconf Macro. ++# ++# This special exception to the GPL applies to versions of the Autoconf ++# Macro released by the Autoconf Archive. When you make and distribute a ++# modified version of the Autoconf Macro, you may extend this special ++# exception to the GPL to apply to your modified version as well. ++ ++#serial 11 ++ ++AU_ALIAS([ACX_BLAS], [AX_BLAS]) ++AC_DEFUN([AX_BLAS], [ ++AC_PREREQ(2.50) ++AC_REQUIRE([AC_F77_LIBRARY_LDFLAGS]) ++ax_blas_ok=no ++ ++AC_ARG_WITH(blas, ++ [AS_HELP_STRING([--with-blas=<lib>], [use BLAS library <lib>])]) ++case $with_blas in ++ yes | "") ;; ++ no) ax_blas_ok=disable ;; ++ -* | */* | *.a | *.so | *.so.* | *.o) BLAS_LIBS="$with_blas" ;; ++ *) BLAS_LIBS="-l$with_blas" ;; ++esac ++ ++# Get fortran linker names of BLAS functions to check for. ++AC_F77_FUNC(sgemm) ++AC_F77_FUNC(dgemm) ++ ++ax_blas_save_LIBS="$LIBS" ++LIBS="$LIBS $FLIBS" ++ ++# First, check BLAS_LIBS environment variable ++if test $ax_blas_ok = no; then ++if test "x$BLAS_LIBS" != x; then ++ save_LIBS="$LIBS"; LIBS="$BLAS_LIBS $LIBS" ++ AC_MSG_CHECKING([for $sgemm in $BLAS_LIBS]) ++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes], [BLAS_LIBS=""]) ++ AC_MSG_RESULT($ax_blas_ok) ++ LIBS="$save_LIBS" ++fi ++fi ++ ++# BLAS linked to by default? (happens on some supercomputers) ++if test $ax_blas_ok = no; then ++ save_LIBS="$LIBS"; LIBS="$LIBS" ++ AC_MSG_CHECKING([if $sgemm is being linked in already]) ++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes]) ++ AC_MSG_RESULT($ax_blas_ok) ++ LIBS="$save_LIBS" ++fi ++ ++# BLAS in ATLAS library? (http://math-atlas.sourceforge.net/) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(atlas, ATL_xerbla, ++ [AC_CHECK_LIB(f77blas, $sgemm, ++ [AC_CHECK_LIB(cblas, cblas_dgemm, ++ [ax_blas_ok=yes ++ BLAS_LIBS="-lcblas -lf77blas -latlas"], ++ [], [-lf77blas -latlas])], ++ [], [-latlas])]) ++fi ++ ++# BLAS in PhiPACK libraries? (requires generic BLAS lib, too) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(blas, $sgemm, ++ [AC_CHECK_LIB(dgemm, $dgemm, ++ [AC_CHECK_LIB(sgemm, $sgemm, ++ [ax_blas_ok=yes; BLAS_LIBS="-lsgemm -ldgemm -lblas"], ++ [], [-lblas])], ++ [], [-lblas])]) ++fi ++ ++# BLAS in Intel MKL library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(mkl, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lmkl"]) ++fi ++ ++# BLAS in Apple vecLib library? ++if test $ax_blas_ok = no; then ++ save_LIBS="$LIBS"; LIBS="-framework vecLib $LIBS" ++ AC_MSG_CHECKING([for $sgemm in -framework vecLib]) ++ AC_TRY_LINK_FUNC($sgemm, [ax_blas_ok=yes;BLAS_LIBS="-framework vecLib"]) ++ AC_MSG_RESULT($ax_blas_ok) ++ LIBS="$save_LIBS" ++fi ++ ++# BLAS in Alpha CXML library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(cxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-lcxml"]) ++fi ++ ++# BLAS in Alpha DXML library? (now called CXML, see above) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(dxml, $sgemm, [ax_blas_ok=yes;BLAS_LIBS="-ldxml"]) ++fi ++ ++# BLAS in Sun Performance library? ++if test $ax_blas_ok = no; then ++ if test "x$GCC" != xyes; then # only works with Sun CC ++ AC_CHECK_LIB(sunmath, acosp, ++ [AC_CHECK_LIB(sunperf, $sgemm, ++ [BLAS_LIBS="-xlic_lib=sunperf -lsunmath" ++ ax_blas_ok=yes],[],[-lsunmath])]) ++ fi ++fi ++ ++# BLAS in SCSL library? (SGI/Cray Scientific Library) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(scs, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lscs"]) ++fi ++ ++# BLAS in SGIMATH library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(complib.sgimath, $sgemm, ++ [ax_blas_ok=yes; BLAS_LIBS="-lcomplib.sgimath"]) ++fi ++ ++# BLAS in IBM ESSL library? (requires generic BLAS lib, too) ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(blas, $sgemm, ++ [AC_CHECK_LIB(essl, $sgemm, ++ [ax_blas_ok=yes; BLAS_LIBS="-lessl -lblas"], ++ [], [-lblas $FLIBS])]) ++fi ++ ++# Generic BLAS library? ++if test $ax_blas_ok = no; then ++ AC_CHECK_LIB(blas, $sgemm, [ax_blas_ok=yes; BLAS_LIBS="-lblas"]) ++fi ++ ++AC_SUBST(BLAS_LIBS) ++ ++LIBS="$ax_blas_save_LIBS" ++ ++# Finally, execute ACTION-IF-FOUND/ACTION-IF-NOT-FOUND: ++if test x"$ax_blas_ok" = xyes; then ++ ifelse([$1],,AC_DEFINE(HAVE_BLAS,1,[Define if you have a BLAS library.]),[$1]) ++ : ++else ++ ax_blas_ok=no ++ $2 ++fi ++])dnl AX_BLAS +diff --git a/configure.ac b/configure.ac +new file mode 100644 +index 0000000..f6707be +--- /dev/null ++++ b/configure.ac +@@ -0,0 +1,16 @@ ++# -*- Autoconf -*- ++AC_PREREQ(2.59) ++AC_INIT(superlu, 4.3, xsli@lbl.gov) ++AM_INIT_AUTOMAKE([foreign]) ++AC_CONFIG_HEADER([config.h]) ++AC_PROG_INSTALL ++AC_PROG_LIBTOOL ++AC_PROG_F77 ++sinclude(ax_blas.m4) ++AX_BLAS ++if test x"$BLAS_LIBS" = x; then ++ AC_MSG_ERROR([Cannot find blas libraries]) ++fi ++AC_CHECK_LIB([m], [floor]) ++AC_CONFIG_FILES([Makefile SRC/Makefile superlu.pc]) ++AC_OUTPUT +diff --git a/superlu.pc.in b/superlu.pc.in +new file mode 100644 +index 0000000..7bf9942 +--- /dev/null ++++ b/superlu.pc.in +@@ -0,0 +1,13 @@ ++prefix=@prefix@ ++exec_prefix=@exec_prefix@ ++libdir=@libdir@ ++includedir=@includedir@ ++ ++Name: @PACKAGE_NAME@ ++Description: Sparse LU factorization library ++Version: @PACKAGE_VERSION@ ++URL: http://crd.lbl.gov/~xiaoye/SuperLU/ ++Libs: -L${libdir} -lsuperlu ++Libs.private: -lm @FLIBS@ ++Requires: blas ++Cflags: -I${includedir}/superlu diff --git a/sci-libs/superlu/files/superlu-4.3-format-security.patch b/sci-libs/superlu/files/superlu-4.3-format-security.patch new file mode 100644 index 000000000000..809408a166ab --- /dev/null +++ b/sci-libs/superlu/files/superlu-4.3-format-security.patch @@ -0,0 +1,16 @@ + SRC/util.c | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/SRC/util.c b/SRC/util.c +index 858fbbc..c038ccf 100644 +--- a/SRC/util.c ++++ b/SRC/util.c +@@ -29,7 +29,7 @@ + + void superlu_abort_and_exit(char* msg) + { +- fprintf(stderr, msg); ++ fprintf(stderr, "%s", msg); + exit (-1); + } + |