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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
inherit autotools toolchain-funcs
DESCRIPTION="Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler"
HOMEPAGE="http://www.bcgsc.ca/platform/bioinfo/software/abyss/"
SRC_URI="https://github.com/bcgsc/abyss/archive/1.9.0.tar.gz -> ${P}.tar.gz"
LICENSE="abyss"
SLOT="0"
IUSE="+mpi openmp misc-haskell"
KEYWORDS="~amd64 ~x86"
RDEPEND="
dev-cpp/sparsehash
dev-libs/boost:=
misc-haskell? ( dev-libs/gmp:0=
virtual/libffi:0=
)
mpi? ( virtual/mpi )
"
DEPEND="${RDEPEND}
misc-haskell? ( dev-lang/ghc
dev-haskell/mmap )
"
# todo: --enable-maxk=N configure option
# todo: fix automagic mpi toggling
PATCHES=(
"${FILESDIR}"/${P}-ac_prog_ar.patch
"${FILESDIR}"/${P}-gcc-6.patch
)
src_prepare() {
default
tc-export AR
sed -i -e "s/-Werror//" configure.ac || die #365195
sed -i -e "/dist_pkgdoc_DATA/d" Makefile.am || die
eautoreconf
}
src_configure() {
# disable building haskell tool Misc/samtobreak
# unless request by user: bug #534412
use misc-haskell || export ac_cv_prog_ac_ct_GHC=
econf $(use_enable openmp)
}
|
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