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# Copyright 1999-2016 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=6
inherit autotools flag-o-matic
DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
# see also http://www.broadinstitute.org/software/allpaths-lg/blog/?page_id=12
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
IUSE="openmp"
RDEPEND="
!sci-biology/allpaths
!sci-biology/vaal"
DEPEND="
${RDEPEND}
dev-libs/boost"
PATCHES=(
"${FILESDIR}/${P}_fix-buildsystem.patch"
"${FILESDIR}/${P}_remove-namespace-std.patch"
)
pkg_pretend() {
# as of release 44849, GCC 4.7.0 (or higher) is required
# seems pre gcc-4.7 users must stay with:
# ftp://ftp.broadinstitute.org/pub/crd/ALLPATHS/Release-LG/latest_source_code/2013/2013-01/allpathslg-44837.tar.gz
if [[ ${MERGE_TYPE} != binary ]]; then
[[ $(tc-getCC) == *gcc* ]] && [[ $(gcc-version) < 4.7 ]] && \
die "You need to use gcc >4.7"
fi
}
src_prepare() {
default
eautoreconf
}
src_configure() {
econf \
$(use_enable openmp)
}
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