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Fixes build with gcc 4.3 and 4.6
http://bugs.gentoo.org/217921
http://bugs.gentoo.org/360517
--- amap-align/align/Amap.cc
+++ amap-align/align/Amap.cc
@@ -12,6 +12,8 @@
#include "ProbabilisticModel.h"
#include "EvolutionaryTree.h"
#include "SparseMatrix.h"
+#include <limits>
+#include <climits>
#include <string>
#include <sstream>
#include <iomanip>
@@ -23,6 +25,7 @@
#include <cstdlib>
#include <cerrno>
#include <iomanip>
+#include <cstring>
string parametersInputFilename = "";
string parametersOutputFilename = "no training";
--- amap-align/align/MultiSequenceDag.h
+++ amap-align/align/MultiSequenceDag.h
@@ -13,6 +13,7 @@
#include <map>
#include <queue>
#include <iostream>
+#include <limits>
#include "MultiSequence.h"
#include "SparseMatrix.h"
--- amap-align/align/SafeVector.h.org 2011-03-26 11:50:11.935069583 +0100
+++ amap-align/align/SafeVector.h 2011-03-26 11:50:21.112553151 +0100
@@ -9,6 +9,7 @@
#define SAFEVECTOR_H
#include <cassert>
+#include <cstddef>
#include <vector>
/////////////////////////////////////////////////////////////////
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